| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0761 |
|---|
| Symbol | |
|---|
| ID | 4689355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 806206 |
|---|
| End bp | 806922 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639833757 |
|---|
| Product | methylation precursor |
|---|
| Protein accession | YP_981001 |
|---|
| Protein GI | 121603672 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.327041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.127693 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA GGCTTGCCGC CTCGAATGCT GCGCGGCTTC GTGCGCGCGT TCGTGGCTTC
ACACTGATCG AACTGCTGGT AGCCCTGGCC GCAATGGCGC TGATGGCCGG CCTGAGTTGG
CGCGGGCTCG ATGGCATGGT GCGGGCACAG TCGCAGATTC AGCAACGCGC TGATGCGGTG
CTGACCCTGC AGGCCGGGCT GACGCAGTGG TCGGCGGACC TGGACGCGCT GATGCAGTTG
CCCCAGACAC AAACGCTGGA TTGGGACGGG CGCGGCCTTC GCATCGTTCG CCGCAGCACC
GTCCAGCCCG GTGACGGCGT GCTGGTGGTG GCCTGGGCGC GCCGCAATGT GAACGGCAAG
GACCAGTGGC TGCGCTGGCA GTCGCCGCCG CAATTTTCCC GCAGCGAGCT GCAAACGGCA
TGGGCCCGTG CCGCGCAATG GGCACAAAAC CCGGGCGATG CGGAAAAAAG GGACGAAGTC
CGCATCACGC CGCTTGAGCA GTGGCAAATC TTCTACTTTC GCGGAAATGC CTGGACCAAC
CCATTGTCCA GCGACAACAC CAGCCAGCCA GCTCCAAACA CGGCCCCACC CGTACCGGCC
GATCTGGCGC TTCCCGACGG TGTGCGGCTG GTATTGACCC TGCCGGCTGG CGAAGCCATC
AACGGCATCA TCACGCGGGA CTGGGTGCGT CCGGCGCTGG CAGGCGCCAA GTCATGA
|
|---|
| Protein sequence | MTARLAASNA ARLRARVRGF TLIELLVALA AMALMAGLSW RGLDGMVRAQ SQIQQRADAV
LTLQAGLTQW SADLDALMQL PQTQTLDWDG RGLRIVRRST VQPGDGVLVV AWARRNVNGK
DQWLRWQSPP QFSRSELQTA WARAAQWAQN PGDAEKRDEV RITPLEQWQI FYFRGNAWTN
PLSSDNTSQP APNTAPPVPA DLALPDGVRL VLTLPAGEAI NGIITRDWVR PALAGAKS
|
|---|
| |