| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0745 |
|---|
| Symbol | |
|---|
| ID | 4686163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 789611 |
|---|
| End bp | 791356 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639833740 |
|---|
| Product | prolyl-tRNA synthetase |
|---|
| Protein accession | YP_980985 |
|---|
| Protein GI | 121603656 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0442] Prolyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00390316 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCT CCCAGTTCTT CATTTCCACC CTCAAGGAAG CACCCGCCGA CGCGGAAATC
GTCAGCCACC AGCTCATGAT GCGCGCCGGC CTGATCAAAA AGCTGGGCGC CGGCATTTAC
AACTACATGC CCATGGGCCT GCGCGTGATC CGCAAGGTCG AAGCGATTGT TCGCGAGGAA
ATGAACCGCG CCGGCGCTAT CGAAATGAGC ATGCCGGTCA TCCAGCCGGC CGAACTCTGG
CAGGAAACCG GGCGCTTCGA AGCCATGGGA CCGGAGTTGC TGCGCATCAA GGATCGTCAT
GGCCGCGATT TCGTGGTCCA GCCGACCAGC GAGGAAGTCG TTACCGACGT GATGCGCCAG
GACATCCGCA GTTACAAGCA GTTGCCTAAA AACCTCTACC AGATCCAGAC CAAATTCCGC
GACGAGCGCC GGCCGCGTTT TGGCCTGATG CGTGGGCGCG AATTCATCAT GAAGGACGCC
TACAGCTTCG ACCGCGACCA GACCGCCGCC AAGGTCAGCT ACCAGAACAT GGCGGAGGCT
TATCGCCGGA TTTTTGACCG CTTTGGCCTG ACCTACCGCG CAGTCGCGGC GGACAGCGGT
GCGATTGGTG GCGATCTGAG CGAGGAATTC CAGGTGATTG CCGCCACCGG CGAAGACGCC
ATCGTCTACT GCCCGACCAG CGACTACGCG GCCAATATGG AAAAGGCCGA AGCGCTGGCC
CCCGCGGGTC CGCGCCCGGA AGCATCGCAA GCGCTGGCCA AAACGCCAAC GCCGGGCAAG
GCCACCTGTG CCGATGTCGC CGCGCTGCTC GGCATCCCGC TGAAAACCAC CGTCAAGTCA
CTGGTGCTGG CCACGGACCT GACCAATGAA GCCGGTGAAG TGGTCAAGAC GCAGGTCTGG
CTGCTGCTGC TGCGCGGCGA CCACGACATG AATGAAATCA AGGTCGGCAA GGTGCCCGGC
CTGGATGCCA GCTTTCGCTT TGCCAGCCTG GCCGAAATTG ACGATCACTT TGGCTGCGAA
CCGGGCTACC TGGGACCGCT GAGCCTGAAA AAACCGGTAA AGCTGGTCGT GGACCGCGAA
GTCGCCGTGA TGGCCGACTG GGTCTGCGGC GCCAATGAAG CCGATTTCCA CATCACCGGC
GTCAACTGGA GCCGCGACCT GCCCGAACCC GACCTGATCG CGGACATCCG CAATGTGGTC
GCCGGCGACC CATCGCCCGA CGGCAAGGGC CTGCTGGCCA TCGAGCGCGG CATTGAGGTC
GGCCATGTGT TCTACCTCGG CACCAAGTAC AGCCGGGCAA TGAACGCCAC CTTCCTGGGC
GAAAACGGCA AGCCGCAATT CCTGGAAATG GGCTGCTACG GCATTGGCAT CACCCGCCTG
CCGGCAGCGG CCATCGAACA GAACCACGAC GAGCGCGGCA TCATCTGGCC GGACGCGATT
GCGCCGTTCA CCGTGGTGAT CTGCCCGATC ACGCCTGAGC GTTTTCCCGA TGTCAAGGCC
GCTGCCGACA AGCTGTACAG CGAGTTGCTC GGTGCCGGTG TGGATGTCAT CCTGGACGAC
CGGGGCGAGC GGCCCGGCGC CATGTTTGCC GACTGGGAAC TGATCGGCGT GCCGCACCGC
GTCACCATTG GCGACCGAGG CCTCAAGGAA GGACACATCG AATACCAGCA CCGCCGCGAC
ACGGCGGCCA GCAAGGTCGA GGCTGCGGCC GCGTTCGATT TCCTCAAAGG CAAACTGGCC
CTGTAA
|
|---|
| Protein sequence | MKASQFFIST LKEAPADAEI VSHQLMMRAG LIKKLGAGIY NYMPMGLRVI RKVEAIVREE
MNRAGAIEMS MPVIQPAELW QETGRFEAMG PELLRIKDRH GRDFVVQPTS EEVVTDVMRQ
DIRSYKQLPK NLYQIQTKFR DERRPRFGLM RGREFIMKDA YSFDRDQTAA KVSYQNMAEA
YRRIFDRFGL TYRAVAADSG AIGGDLSEEF QVIAATGEDA IVYCPTSDYA ANMEKAEALA
PAGPRPEASQ ALAKTPTPGK ATCADVAALL GIPLKTTVKS LVLATDLTNE AGEVVKTQVW
LLLLRGDHDM NEIKVGKVPG LDASFRFASL AEIDDHFGCE PGYLGPLSLK KPVKLVVDRE
VAVMADWVCG ANEADFHITG VNWSRDLPEP DLIADIRNVV AGDPSPDGKG LLAIERGIEV
GHVFYLGTKY SRAMNATFLG ENGKPQFLEM GCYGIGITRL PAAAIEQNHD ERGIIWPDAI
APFTVVICPI TPERFPDVKA AADKLYSELL GAGVDVILDD RGERPGAMFA DWELIGVPHR
VTIGDRGLKE GHIEYQHRRD TAASKVEAAA AFDFLKGKLA L
|
|---|
| |