| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4178 |
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| Symbol | |
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| ID | 4670385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008765 |
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| Strand | - |
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| Start bp | 13608 |
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| End bp | 16232 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639826852 |
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| Product | hypothetical protein |
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| Protein accession | YP_974014 |
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| Protein GI | 121582482 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0161122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGACA GCATGATGGA CAAGCTAAAG GGTGCTGCCG CCCGGTTTTG GGACGAAACC
GTGCTGGGCA ACACCTCGGA TGTCGGGAGC CAGCCGGCCC CCGTGGCGGC CGCCAACGAG
GTGACGAGCC TCTACGGGCT GCACAGCATC CTCAAGTACG ACCAATACGA CCCCGACACG
GGCCTTTTCT ACAACGACAA CTCGGTGGCC TTCTGCTTTG AAGTCATCGC GCAAACCGGC
GCGGACGACG ACATGGCGAG CCGCCTCAAT ACGCTCTTTA CCCTGGTGCC GCCGCACTAC
GGGATTCAGT GGTGCCTGTT CGGTAGCCCG GTGCTGGATG ACCAGTTCCA AGCGTACATG
GATCAACGCC ATATCGCGGT GGACAACGGC AAGACCACGC CGTTCTTCCA GGAGCTGGCA
AAGCGCCGCG TGGAGTACAT CTACAAGGCA AAGGGCAAAC CGCTTTGGCC CAATGACAAC
TACGTGGTGA AGAACATCCG CCTGCTGTTC TCCATCACCA AAGCCGGTTC CTTCCGTGAC
GCCAAGCTGG TGGAGGAAAT GTACGAGCTG CGCGAGACAG TGCGCGCTTC GCTGCGCACG
GCAAGCCTGC CGTCCTTTCC CCTCGATGCT GACGGCCTGA TTAGCTTCCT GTGGCCGATC
CTCAACCCCG AAAGCATGTT CAGCAAGGAG CCGTTCCCCG ATCTGCGCTA CGACGACGGG
AAATCCATCA AAAATCAAGT CACGGCCTTT GGCCAGCATG TGCGCGTGAA AGCCAACGAG
CTGCTGTTTG GCCTGCCGCC CGAGAAGCAG GGCGACGAAG ACAAGCGCAT CGCCGTGCGT
GGCTTCGGCG TGCTTCAGTA CCCGCAGAAG AAAGAGCTGT GGGAGATGGC CAACATCATC
GGTTCGTTTT TCGATGACGG CCTTCAATAC CCGTGCCCAT TCCTGGTGTG CGGTGGCGTC
TTCACGCTTG ACCCCAACGT GGTGGACGGC AAGGCTCAGA TCAAGGCCGC ACGCACCAAG
CAAAACGCCA AGTCCAAGAT GGCCGAGTTC CAGCCCGAGC TTCAGGCCCA GGCGAACGAT
TGGGACATCG TGCTGCACCA GCTCAACAAC GGCGGCAGCA TGTGCGAGCT GTACCACACG
CTGCTGCTGT TCGCACCCAA GCGCGTCATC AACCGGGCAA GCCAAGTGGC CCTGAACGTG
TGGCGCAGCG AACGCTTCAC GATCTGCCCG CTGCAACTGC TGCAACTGAC GGCCCTGTAT
TCCAGCCTGC CCATGACGCT CACCGAGACG GTGCGCGACG ACTTGCAGAA GCTACGCCTC
ATCACGTCCA AGACCACGGT GAACGCGGTG GACATGGCCC CGGTGATTGG CGAATGGAAG
GGCGCAGGCG ACCCGGTGAT GATGTTCTTT GGCCGTCGTG GCACCCCTAC CTTCCTCGAC
TTCTACAGCA ACCAGCAGGG CAACTACAAC GTGTTCGTGG CGGGCGTGTC CGGTTCGGGC
AAGTCCGTGA CCATGAACGA AGTCGTTTCG GCCTATCGAG GTATTGGCGC GCGGGTGTGG
GTGATCGACG TGGGCCGCAG CTATCAGAAC CTGATCCGGC TCCAGAAAGG CACCTTCCTG
GAGTTCACGC CGAGCACGAA GCTGTGCATC AATCCATTCA CTTGGGTGGG CACCGACGAC
GAGCTGGATT TCAAGGCGGA AATGCGGATG CTCAAGCCGA TGATCGGCCG CATGGCGTCC
CCCAATGCGC CGCTGACGGA ATTCCAGTAC GCGCTGATCG GGGAGGCGAT TACCGCCGTC
TGGCAAGACT ACGGGCAGGA CACCAACCCG ACCCGCATCC GCGACTACCT GTTGAGCAAC
ATCAAGAACG AGTCGGGCAG CACCGAGCGC GTGGCCTACG AGCTGGCCAA GCAGCTCGCG
CCGTTCACCA AGGATGGCGT CTATGGGGAC TTCTTCAACG GCCGCGCCAA CATCAGCTTG
GACGCCGACA TGGTGGGGCT GGAGCTGGAG GAACTGAAGA ACGCTCCCGA GCTGCGCCGC
GTGGTGCTGT TCGTGCTGAC CTCGCGCATT GCCCACGACA TGTATCTGAC CCGCGACCGC
AAGAAGCTGT GTCTGGTCGA TGAGGCATGG CAGCTCCTGG GGGCTGACAA GGAAACCGCA
GAGTTCATCG AGGAAGGCTA CCGCCGCGCC CGGAAGTACA ACGGCATTTT TTGTGTGGGC
ACGCAAGGTA TCGAAGACGC CTATAAAAAT GATGCGGCCC AGGCGGCCTA CAACAACGCC
GACTGGAAGA TTCTGCTGCG CCAAGACCGC AAGAACCTGG AAAAGCTGAT CGAGGACGGC
ATGGTGAATT TCTCGCCGGC CGTGAAGCGG ATGCTGCTGT CGCTGCGCAC CGAGCGCGGC
CGCTTCAGCG AAATGCTCAT TTCCTCGCCC AACGGCGATT CCGTGGTGCG CCACATCCCC
GATCCCTTCT CCCTGCTGAT GGCTTCGACC AACGCGCAGG ACTTCAACGA ATGCAACGCG
CTGCTGGAGC AGGGCCATTC CACGATGGAA GCCCTGGAAA TCATGCTGGC CCGCCGCGCC
CCTCAAGAAC AACTGTCCCC GCGCCGGAGG AAAGATGACT ACTGA
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| Protein sequence | MQDSMMDKLK GAAARFWDET VLGNTSDVGS QPAPVAAANE VTSLYGLHSI LKYDQYDPDT
GLFYNDNSVA FCFEVIAQTG ADDDMASRLN TLFTLVPPHY GIQWCLFGSP VLDDQFQAYM
DQRHIAVDNG KTTPFFQELA KRRVEYIYKA KGKPLWPNDN YVVKNIRLLF SITKAGSFRD
AKLVEEMYEL RETVRASLRT ASLPSFPLDA DGLISFLWPI LNPESMFSKE PFPDLRYDDG
KSIKNQVTAF GQHVRVKANE LLFGLPPEKQ GDEDKRIAVR GFGVLQYPQK KELWEMANII
GSFFDDGLQY PCPFLVCGGV FTLDPNVVDG KAQIKAARTK QNAKSKMAEF QPELQAQAND
WDIVLHQLNN GGSMCELYHT LLLFAPKRVI NRASQVALNV WRSERFTICP LQLLQLTALY
SSLPMTLTET VRDDLQKLRL ITSKTTVNAV DMAPVIGEWK GAGDPVMMFF GRRGTPTFLD
FYSNQQGNYN VFVAGVSGSG KSVTMNEVVS AYRGIGARVW VIDVGRSYQN LIRLQKGTFL
EFTPSTKLCI NPFTWVGTDD ELDFKAEMRM LKPMIGRMAS PNAPLTEFQY ALIGEAITAV
WQDYGQDTNP TRIRDYLLSN IKNESGSTER VAYELAKQLA PFTKDGVYGD FFNGRANISL
DADMVGLELE ELKNAPELRR VVLFVLTSRI AHDMYLTRDR KKLCLVDEAW QLLGADKETA
EFIEEGYRRA RKYNGIFCVG TQGIEDAYKN DAAQAAYNNA DWKILLRQDR KNLEKLIEDG
MVNFSPAVKR MLLSLRTERG RFSEMLISSP NGDSVVRHIP DPFSLLMAST NAQDFNECNA
LLEQGHSTME ALEIMLARRA PQEQLSPRRR KDDY
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