| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4867 |
|---|
| Symbol | |
|---|
| ID | 4685678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008759 |
|---|
| Strand | + |
|---|
| Start bp | 42622 |
|---|
| End bp | 43443 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639826509 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_973673 |
|---|
| Protein GI | 121583237 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACGCTC CAACCCTCAA CCGCTACCGA GGCGACTTTG TCGCCTGGAC GGGTGGGTGC
GGGTTCATCG GCGAAGGCGG GGGCGGGGGC GCGCCCATTT CACCGCACGC GCATTACGCC
ATACAGCTGG CAATTGGCGC GCCGACAGGA CTGCGCGTTC AGTTTGGCCG GCGAGGCGAG
TGGCAATCCT GCCCGGCAGC GCTGGTTCCT TCACGGGCAA CCCACAGCAT TGACGTCAAT
GACTGCGAAT GGAGCGCTGT GCTGTTCATC GAGCCGGAGA CACCCGAAGG CAAGGCCCTT
AGCGCAAGGC TGCAAGGCCG GCTTGAGTTG CTCGATGCCG ACTTCGTTGC AGCCACGACC
CGGCGCCTGG CCACGGCCTG GCGCATAGAA AGGAACTACG ACGCAGTCAT TGCCGCGTGC
CTTGAACTCG TGCACAACAT TTCAGGGACC ACCTTGCGCA CGCCATCGGA CCCGCGCGTG
TTGGCGGCGG TGCACTACAT CGGCCAACGG GCGGGCCACA CCGTTTCGCT GAGCGAGGTC
GCGCAAGCCG CGAACCTGTC TGCGGGGCGC TTTCGGCACC TCTTCGTCGA AGAGACCGGC
ATGCCCTTGC GCACATACCT GTTGTGGCGA CGGCTCTTGC AGGTCTGGAC GCTGTTGATG
CAGGGCCAGA CGCTATCGAG CGCAGCCCAT GCGGCCGGGT TCGCCGACTC GGCGCACCTG
TCGAGGACGG CCCGCTCGAT GTTTGGCCTG GCGCCCTCGG CCCTGCAGAT GAACGGCCCG
CTCAGCGCCC GCTTGCGAAT GCCGCAGCAT CACCTGGGCT GA
|
|---|
| Protein sequence | MDAPTLNRYR GDFVAWTGGC GFIGEGGGGG APISPHAHYA IQLAIGAPTG LRVQFGRRGE
WQSCPAALVP SRATHSIDVN DCEWSAVLFI EPETPEGKAL SARLQGRLEL LDADFVAATT
RRLATAWRIE RNYDAVIAAC LELVHNISGT TLRTPSDPRV LAAVHYIGQR AGHTVSLSEV
AQAANLSAGR FRHLFVEETG MPLRTYLLWR RLLQVWTLLM QGQTLSSAAH AAGFADSAHL
SRTARSMFGL APSALQMNGP LSARLRMPQH HLG
|
|---|
| |