| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4587 |
|---|
| Symbol | |
|---|
| ID | 4685510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008758 |
|---|
| Strand | - |
|---|
| Start bp | 154617 |
|---|
| End bp | 156971 |
|---|
| Gene Length | 2355 bp |
|---|
| Protein Length | 784 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639826433 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_973597 |
|---|
| Protein GI | 121583156 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA CCTTTCGCGT TGCCGCACGT GCCCTCAAGC AGATGGGCGC TGAGATGATC
ACATCTGATG ACGTGGCCCT CAATGAGCTG ATTAAAAACG CTTTTGACGC GAGGTCTCCT
CGGGTGACAG TGGCCATTGA TGCGCCGGCG GATTCGGCTG CTTTGGCGCT CGTTGCAGAG
AAGGTGAAGA AAGAAAAGCT CGGAAAAAAG GTAACTCTAG AGATGGCTGA GAAGGCAATT
TCATCGGACC TAAGCTCTGT CGTTAGAACC CAATTAATCG CCGAGTTTGC CGAACACATG
GATACTCAAG ATCAGTTTCT TGCATTCGTA AATAAATTTC GGAAAGAACG ATTCAAAATC
GTTGTGAGTG ATACGGGTAT TGGGATGAGT GCTGATGACG TCGCTTCGCG GTTTTTAGTT
ATTGGGACCC CTGGCAAATA TATCGCCAAG AAAAATGCAG CTTTTGGAGA TCCGACAATT
CTGGGTGATA AAGGAATTGG GCGTCTTTCG ATGATGAGAT TAGGGCAGAC GGCTGCCGTC
AAGTCAAAGC AGTCAGGCGA TCAAACGCTG CACACTGTCA GGTTTTCTTG GGCTGAGTTC
GACGATCCGC AAAAATTTCT CGATGAGGTC CCCATCGAGA CTTCAGAAGA AGTCTTCGAC
GGCGACGTCC AAAGCAGCGG AACGAGCGTC GCCATCAGCA ATTTGACTGC CTTGTGGACG
GCTGAGAAGG TCGGTAGTTT TATTCAGAAA TATCTTCGTC GGCTGCAAAA TCCATTTTTC
GCCAATAAGC GCCGATACCC CGTGGACGTG TTGCTTAACG GGCACCGGCA ACCTATCGCC
ACTATTCCTG AATGGCTAGA AAAATGTTCT CAGTTCAGAG CGACGGTTGT CTTCAATCCA
AAGGGTGTTG ATGCCGCCGG AAGCGTTATG CGGCGTAGTG TAATGTGGAG GAATTCGACG
GTATCTGACG ATAGAAGTTG GACCCTCAGT GAGCTGACAG AACGACTTGG TTACCCAGAA
GAGCTTTTTC ATAGCCTTGG ACCTTTTGAA GCCACTTGCT TGTGGTTTAA CAGGCAGGCT
TTGTTTGCGA ATACGGTTGA CCGAAGCAGA ACGGATGTCA CAAACGAGCT GAATCTTTGG
TGTGGCGGTT TCGCTATTTA CCGCGATGGC TTTCGCGTCG GGCAAACAGG TGGCATGGAA
GACGATTGGC TCGAGTGGGA CAGTCGCGCC CTTAAAACCA AAGGCTATGC GTTAAATCGC
TACCAGACAG TGGGAAGCGT ATCCATCTCC TCAGTCAATA ACCCCAAATT AGTTGACGCA
GCTAATCGAG AGCGTCTGGT TGCTTGTCCC GAGCAACAGC TTCTTAAAGC TTTGCTTGGC
GAGGAAATCG TCACCGAACT TCGTGGTCTT ATTGGCCTCA CTCAGGAAGC CCAAGCAAAA
ATTGCCTTAT CGCAAGAATC CACGGAGGAG TCGCTCAGAC GCTCGGAGGC AGGGCTCACT
AAGACCCTGC GCACTTTCAA TCAAATCGTC AGCTTTATTC CGGCGGAGCA CAAGCACAAA
ATCGTAGAAA TTCGTGAGGA GATCAACAGC CAGGTTGAAT ACGTAAAGAC GATCAAACGG
GCTCTTGATC TCGCACGAGA GACGCGCGTC GAATTGCTCG AACTTGCCAA TATCGGCCTC
GTAGTTGAAA TAGTCATCCA TGAGCTGACT CGGTTAACCG AACGCACAGG GGAGCTACTG
GCGCAGCTAC AGGGCAACAA AAAGACTGAC GACATAGTAG ATCTGATCGA CAATCTACGC
GGGCAGATCG TCGCTACCAA CAAGCGCATT CGAACGGTTG ATGCCATGAG TCCGTCTGGG
CGCAATAGAC GTGAAAAATA TGATGCAGTT GCCCAAGTTA AAACGGTTTT GAATGGCTTT
GAGCCAAGAT TTAAGCGTCA CGAAATCAGG TCAGTGTTGA AAGTAGATGG CGGCTCGGCA
GACAAGACGC TTCCTGTTCA TATGGTTCGC GGTCTTATAG CCCAGGCCTT GGAGAATCTT
TTATCCAATT CTGCCTACTG GTTGCAAAAG TCCATCAAGA GCGGAGATGA GCAGCGCCTT
CTCACGGTTG AAATTGACAC TAAAGCATTC ACGATCTCCG TGACGGACAA CGGTCCGGGA
ATCGATCCTG AATACGCTAC CACTGTGTTT AGACCATATT TTTCGATGCG AAGAAAAGGC
AAAGGCCTTG GCCTTTATAT CGCTTCTGAA CTCGCCGCTT ATCACGGTGG GCGTCTTTAT
CTGGATGAAG TTCAGGATGA CGATGGCAAG CTCAGAACGT TTATCTTGGA ACTTCCTAAG
GATGGTGATG CATGA
|
|---|
| Protein sequence | MKHTFRVAAR ALKQMGAEMI TSDDVALNEL IKNAFDARSP RVTVAIDAPA DSAALALVAE
KVKKEKLGKK VTLEMAEKAI SSDLSSVVRT QLIAEFAEHM DTQDQFLAFV NKFRKERFKI
VVSDTGIGMS ADDVASRFLV IGTPGKYIAK KNAAFGDPTI LGDKGIGRLS MMRLGQTAAV
KSKQSGDQTL HTVRFSWAEF DDPQKFLDEV PIETSEEVFD GDVQSSGTSV AISNLTALWT
AEKVGSFIQK YLRRLQNPFF ANKRRYPVDV LLNGHRQPIA TIPEWLEKCS QFRATVVFNP
KGVDAAGSVM RRSVMWRNST VSDDRSWTLS ELTERLGYPE ELFHSLGPFE ATCLWFNRQA
LFANTVDRSR TDVTNELNLW CGGFAIYRDG FRVGQTGGME DDWLEWDSRA LKTKGYALNR
YQTVGSVSIS SVNNPKLVDA ANRERLVACP EQQLLKALLG EEIVTELRGL IGLTQEAQAK
IALSQESTEE SLRRSEAGLT KTLRTFNQIV SFIPAEHKHK IVEIREEINS QVEYVKTIKR
ALDLARETRV ELLELANIGL VVEIVIHELT RLTERTGELL AQLQGNKKTD DIVDLIDNLR
GQIVATNKRI RTVDAMSPSG RNRREKYDAV AQVKTVLNGF EPRFKRHEIR SVLKVDGGSA
DKTLPVHMVR GLIAQALENL LSNSAYWLQK SIKSGDEQRL LTVEIDTKAF TISVTDNGPG
IDPEYATTVF RPYFSMRRKG KGLGLYIASE LAAYHGGRLY LDEVQDDDGK LRTFILELPK
DGDA
|
|---|
| |