| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4553 |
|---|
| Symbol | |
|---|
| ID | 4685539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008758 |
|---|
| Strand | - |
|---|
| Start bp | 119184 |
|---|
| End bp | 120602 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639826402 |
|---|
| Product | putative copper resistance-related lipoprotein |
|---|
| Protein accession | YP_973567 |
|---|
| Protein GI | 121583126 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.910933 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA TTTTTCGACT CTCCGCCGTG GCCATGTCAG CACTGGTGCT GGTCGGCTGC
GCTTCGGTCA ACTTCGACCA GGCGGTGCAG GGCACCAATG ACAGCACAGG CACCTTCACC
CAAGGCAAGC TCGAGCTCAG TCGTACTGAG CAGCAAAGTC AAGCCAGGGC GAGATTGACC
AGTGAGTTGC TTGCCAAATC GCTGAGCATG GACGAAGCCG TGCAACTGGC ACTGGCCAAC
AGCCCGGCGG TGCAAACATT GCTGGCGCAA AGCTGGGCCG ACATGGCACA GGCCAACCAG
ACGGGCCGAA TCGCCAACCC CGTGTTCAAT TTCGAGCGCG TCCGCTCGGG CGAGGAACTG
GAACTGGGCC GCTTGCTGTC CTTTGGCCTG CTCGATTTGT TGATGCTGCC CCGGCGAATG
GAAATTTCCC GAGGTCAGAT GGCGCAGGCC CGGGTCCAGC TCAGCGCCAA TGTGGTCGAG
CAAGTGACCC AGGTTCGCCA GGCCTGGGTT CGCGCCGTCG CCGCGCAGCA GACCTTGGCG
TATGCAAATC AGGTCAACCG CAGCGCGCAG GCGAGCGCCG AACTGGCGCG GCGCATGCAG
CAGGTGGGCA ATTTCAACAA GCTGCAGCGT GCGCGTCAGC AAAGCTTTTA TGCCGACAGC
GCAGCGCAGC TGGCCTCCAG CCAGCATGCC AGCACCGCGG CCAGGGAAGA ATTGACCCGG
CTGCTGGGAC TGACAGCGGC ACAAGCCGGG CAGTTGCAAT TGCCTGAACG CCTGCCCGAG
TTGCCCAAGG AGCCCCGTCA AGCCGCCAGC GTCAACGCGA ATTCTGCCGA GCAGCGGCTC
GATGTGCGGA TGGCGCGCCA GCAGCTCGAC AACGCCGGCC GGTCACAAGG ACTGAATCTG
ATCGAGAGCC TGGTGGATGT GGAGCTCGGC ATTCGCCGTG ACACGGTCTT TGACAACGCA
GAAGGCACGA AAAGCGCGCG CAAGGGTTAC GAGCTTGATA TTCGCCTGCC GATTTTCGAC
TGGGGCACCG CCAAGCGGGA CGCGATGAAC GCGCAGTCGC TGGCTGCGGC CAGCCGGTAT
GAAGGCGCAG TGCGCGGCGC CTCGTCCCAA CTGCGCGAAA GCTATTCGGC TTACCGCACC
GCTTACGACG TGGCTCGGCA TTACCGCGAT GAAATCGTGC CGCTGCGCAA GACCATCTCT
GAAGAAAATG TGCTGCGCTA CAACGGCATG CTGATCGGCG TGTTCGAGTT GTTGGCCGAC
AACCGCGACC AGATCGCCAG CGTCACCGCT GCCCTCAACG CTTACCAGCA GTTCTGGCTG
GCCGATGCCG CGCTGGCTGC CTCCATGATC GGCAAGCCGA CCACATTGGC CATGGCCGCG
CCTGCAGCAG GTGGTGGCGG TGAAGCCGCT GGCCACTGA
|
|---|
| Protein sequence | MKRIFRLSAV AMSALVLVGC ASVNFDQAVQ GTNDSTGTFT QGKLELSRTE QQSQARARLT
SELLAKSLSM DEAVQLALAN SPAVQTLLAQ SWADMAQANQ TGRIANPVFN FERVRSGEEL
ELGRLLSFGL LDLLMLPRRM EISRGQMAQA RVQLSANVVE QVTQVRQAWV RAVAAQQTLA
YANQVNRSAQ ASAELARRMQ QVGNFNKLQR ARQQSFYADS AAQLASSQHA STAAREELTR
LLGLTAAQAG QLQLPERLPE LPKEPRQAAS VNANSAEQRL DVRMARQQLD NAGRSQGLNL
IESLVDVELG IRRDTVFDNA EGTKSARKGY ELDIRLPIFD WGTAKRDAMN AQSLAAASRY
EGAVRGASSQ LRESYSAYRT AYDVARHYRD EIVPLRKTIS EENVLRYNGM LIGVFELLAD
NRDQIASVTA ALNAYQQFWL ADAALAASMI GKPTTLAMAA PAAGGGGEAA GH
|
|---|
| |