| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4235 |
|---|
| Symbol | |
|---|
| ID | 4685282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 107238 |
|---|
| End bp | 109205 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639826095 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_973260 |
|---|
| Protein GI | 121582818 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGG TGAACCTTTT TAGAAAACTT TTTTTACGAC CCGCACTGGT TGAAAATCAA
GTTATCGCTT CGGACATTGC AGCAGCCGTC AATTTTCGCC CGCGCAAGCC CCTGAAGGTT
TCGGTGGCTG ACGCCATGGC CGACAGTGAA GACATCCCTA GCAATATCGA AGCGTTCGCT
ACTTCCGTAG CTTCTACAAA TGTCCAGCAC GGGCCATTTG GAAAATCCAT TTCCGTGGAA
ACCATCAAAG ACTTTGCAAC GCTTCCTCTG TTGTTTGAAG GTCTCGTCAA TGACTTCCAG
CTCGGCAGTC ACCTTGGCTA TAACGTCCAG CCCGCACTGT TTGGAGGCGT TCAGGGAAGT
GAGGCCGCAA GGATTGCCAT CCTCGTCAAT CCTTTGTATG CCAACTCGGA TGAAGTGGTA
GAACTCCTTT CGATCTTGGC AAATCCCAAG CAACACAAGC ACGAATTCAA ACTCTGGGAA
CACGCCTCCA GAGTCATCAT TCCGCATTCG CTGATGCTCT CGCTAAGCCG CGGGGAAATT
GACAAAAACA GCTTGAGCAA TCGCAGAAAA ATAAATTCCG ATCCGAAGAA GCATTCCTTT
TACGTCGCGC TGGAAAACAT CATCCAGTGG GGAGTGCGGC AAAACGCATC TGACGTTCAC
TTCAACCTGA ACTTCAACGA AGAACACAGC GAGGTCCGCT TCACCATCAA CGGCCGTTAT
GTGGCTCCAC AGATGTGGCG CATGCCAACA CAAACCATGT TCCAGATTCT GAGCGTTGCC
TGGATGTCTG GCACGGGCGG CAATGGGCCT AGCTATGACA CGCGCGTCGA GCAGCAATGC
CGGATCGCAT TGAAAATTGA CGATAAGCCG ATCATGCTTC GATGGGCCTC AGCATCGACC
GAATCGCCTG GCCCCTCCGT CACGACGCGG ATCATCAAAT CGGATGCCAA CATCCTGACG
CTTGAGCAAC TCTCGTATTT GCCAGACCAG ATTGCCACCT ACAACCGGGC CATGAATGCC
GAGAAGGGCG CGATTATCCT GGCAGGTGTT GTGAACTCCG GCAAATCCGT CACGATCGCG
TCCCTCATGG GCAGCCTGCC TGATTACCGA AAAAAGCTGG GCATCGAAGA TCCGGTAGAA
ATCCTGATCC CCGGCATGCT GCAAAAGTCC ATCAATCGGC CGCTCGAAGG CGACACGGGC
AAGGAATTTG ACGCCATCGC AAAAACCGCC AAGCGCTTTG CGATGAATGA CATTTTGATC
GGTGAAATCC GTGACAAGGC TACCGGAATG CTGATGGTGG ACATTGTGCT GATGGGCACA
TCCGTGTACT GCACGACCCA CACACCTTCA GCACTGGGCG CCTTCGACAA GCTAGCGAGC
GACATGGTGG GAGTTTCGCG TGACTTTCTC TCGGTTCCGG GAAACGTCAA GCTCATCACA
TACCAGGCAT TGCTGCCCAA GCTGTGTACC TGTGCGCTGC CACTTAAATG CATTACCCAG
CAAGGCCATG CAGAGTACAA GGCCTCCGGT AATGACTACA TCAAACGGCT ACAAAGGCTC
TATGACCTGG ACGAATCCAT GCTGCGCATC GGCAACCGGG AGGGTTGCCC CAAATGCCGG
CATGAAGGAC TGCCCGAGCT CAATGGCTTT AAAGGAAGAA CACTTGCAGC AGAAATGGTG
GAGCCTGACG AAACGCTGCT CTCGATGGTC AAGCAGGCCG ACAGCATTGG AATGCGGCGC
CACGTAGCCG AGTTGCGGGG CAGCACCCGA TTTGACGACC CGTTGATGGT AGGAAAGAGC
GCAATGGAAT GCGCCGTTTA CAAAATGTCC ACCGGCATCC TGGACCCGCG CGAGATTGAG
CCCCGGTTTC ATTCGTTCGA ACGGGAAGAA ATGATGCGTG CGTCTTCGAA GCACTACGCT
GAACACGTTG AAAAGCAAGT TTACACAGCA CTTAAAAAGG TAAGGTAA
|
|---|
| Protein sequence | MAMVNLFRKL FLRPALVENQ VIASDIAAAV NFRPRKPLKV SVADAMADSE DIPSNIEAFA
TSVASTNVQH GPFGKSISVE TIKDFATLPL LFEGLVNDFQ LGSHLGYNVQ PALFGGVQGS
EAARIAILVN PLYANSDEVV ELLSILANPK QHKHEFKLWE HASRVIIPHS LMLSLSRGEI
DKNSLSNRRK INSDPKKHSF YVALENIIQW GVRQNASDVH FNLNFNEEHS EVRFTINGRY
VAPQMWRMPT QTMFQILSVA WMSGTGGNGP SYDTRVEQQC RIALKIDDKP IMLRWASAST
ESPGPSVTTR IIKSDANILT LEQLSYLPDQ IATYNRAMNA EKGAIILAGV VNSGKSVTIA
SLMGSLPDYR KKLGIEDPVE ILIPGMLQKS INRPLEGDTG KEFDAIAKTA KRFAMNDILI
GEIRDKATGM LMVDIVLMGT SVYCTTHTPS ALGAFDKLAS DMVGVSRDFL SVPGNVKLIT
YQALLPKLCT CALPLKCITQ QGHAEYKASG NDYIKRLQRL YDLDESMLRI GNREGCPKCR
HEGLPELNGF KGRTLAAEMV EPDETLLSMV KQADSIGMRR HVAELRGSTR FDDPLMVGKS
AMECAVYKMS TGILDPREIE PRFHSFEREE MMRASSKHYA EHVEKQVYTA LKKVR
|
|---|
| |