| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4232 |
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| Symbol | |
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| ID | 4685455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 103411 |
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| End bp | 105033 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639826092 |
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| Product | lipoprotein |
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| Protein accession | YP_973257 |
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| Protein GI | 121582815 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.634077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCAAC ATCTTTTAAG CCTTTTCGTT ACGGCTGCCC TCGCCACGAT TGCCTTGCCG
GGCTGCGGCA CCTACAACGG CAAGCAAGAA ATCAAACAAT CGCTCGGCGA GACAAGGCAG
CACATCGATG CCATGGCGAC TGCATCGAAT AGCCGCGCGC GTGACATGGG CATCAACAAG
TTCAACGGCC AGGATGTTGG CGCACCCTGG ATAGCGGGCA AGAGCATTCC GCTTTCCAAA
GAAGTCAGCG TGCCTTCCCA ACTTCGCAAA AATGTCCGCA CCACCGTTTT GTCTTCTGAA
TGCGCCAATG CAGTGACCTT GCGAGTTGTG GCCAATTGCA TCACCGATGC AACCGGCTTG
CCAGTGCGCG TGAAGGCCGA CGCAAACCTG CCAATCGCAT CGTTTGTTCC CCGCGCTTCA
GCAGGAGCGG GTCCCGCACC AGCCCCAGCT ACGCGGCCAG GTGAAGCCGG CAACTCGGGT
GCAAACACAA CACGGGTTTT TACCCCTGAA GCGGCCGACA TTTCCCTCAC CAGGCTGCTC
GACACAATCT CTGCGGTCTA TTCGGTTTCC TACCGATTGA CCAATGATTC GGCGCTAGAG
TTCTATAGGC TGGACACGCG CACATTCCGC ATCAAATCAC TGGCTCAGAA GTTGACAGCC
AAAACGACGC AGTCCACCGG TTTTGACAAC AATTCGATCA CCACGTTTGA AATCAAGGAA
GCCGATGCAA TCGATGCTAT CGGCAAAACC ATCACGGCGA TGGGCACGAT GGCCGGCAGC
ATCAATGTCT CGCACGAAAC AAAAGCGGTC ACTGTCACCG ATACGCCCGA AGTGCTCGAC
AGCATCGCTC GTTACCTTGA AGAAGAAAAC AAGCGCCTCA CGCGCCGCGT GACGTTGGTT
GTGGATCAGT TCTATGTCAG CGACAAAGAC AACCGCGAGT TCAGTCTGGA CTGGAATCTG
GTTTACGGTG CATTGAACGT GAGCAGCGCT AGCAGAGCGC CAACAACATT GGCGCCCGAC
ACTGCCGGCG CATTTGGAGC GGTTGCCAAC ACAGGGCGCT TTGCTGGCTC AGGCCTGTTG
GTCAAAGCGC TGTCCGAGCA GGGGCTGATG GTCCAGCAAC GCAGCTTTCC ATTAAGCACC
CAGAATGGCT CGCCGGTATC TATTGGATTG CCCACCATTT TTGATTACGT TTCAGAAGTC
ACTTTGACGC AAACGAATGC AGGTGCAGTC AACAGCCAGA CCGCTCCCAG CGTGAAGCAA
AAAGAAGAAA AAATCGGCAC TTACTTGACC ATCACGCCTG AAGCCCAGGA TGACGGGCAA
GTCATCATCA GCGCGAACTT CCAGGACCGC ACCGGTGTCT TGACACCTTA CACGGTGCAG
GCCGGCGGCA ACTCCAGCAC GATTCAGCAG CGCAACATTG ACGAGGTGAG CAACATCGTT
CGCACCGTGG TCCGCGTGGG TGTACCAACC GTCATTGGAG GCTTGTCCGA GACCGTTGAC
AACAGCAAGG ATCGTCGCCT TGTCGATGGA GCCCCAATCC TCCTGGGTGG CTCCGACTCT
TTGAAAAAGA ACAGGCGCTC CATGATTCTG GTGGTTACCG CCGTTGCTGA GGATGGCGTT
TAA
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| Protein sequence | MRQHLLSLFV TAALATIALP GCGTYNGKQE IKQSLGETRQ HIDAMATASN SRARDMGINK
FNGQDVGAPW IAGKSIPLSK EVSVPSQLRK NVRTTVLSSE CANAVTLRVV ANCITDATGL
PVRVKADANL PIASFVPRAS AGAGPAPAPA TRPGEAGNSG ANTTRVFTPE AADISLTRLL
DTISAVYSVS YRLTNDSALE FYRLDTRTFR IKSLAQKLTA KTTQSTGFDN NSITTFEIKE
ADAIDAIGKT ITAMGTMAGS INVSHETKAV TVTDTPEVLD SIARYLEEEN KRLTRRVTLV
VDQFYVSDKD NREFSLDWNL VYGALNVSSA SRAPTTLAPD TAGAFGAVAN TGRFAGSGLL
VKALSEQGLM VQQRSFPLST QNGSPVSIGL PTIFDYVSEV TLTQTNAGAV NSQTAPSVKQ
KEEKIGTYLT ITPEAQDDGQ VIISANFQDR TGVLTPYTVQ AGGNSSTIQQ RNIDEVSNIV
RTVVRVGVPT VIGGLSETVD NSKDRRLVDG APILLGGSDS LKKNRRSMIL VVTAVAEDGV
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