| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3892 |
|---|
| Symbol | |
|---|
| ID | 4665564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4316821 |
|---|
| End bp | 4317684 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639825081 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_972210 |
|---|
| Protein GI | 120612532 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTGA AGGCACTGCG GGCGTTCGTG GCCGTCGGCC GGCACGGCAA GTTCACGCGG
GCGGCCAGTG CGCTCGGCAT CACGCAGGGC GCGGTCAGCC GCCACATCGC CGTGCTGGAA
GCGTTCGCGG GCACGGCGCT GTTCATACGC CGGGGCGCCA CCATCGAGAT GACGCCGGCC
GGGCTCCAGC TCTTCGAGGC GGTGAAGGAC GCGATGTCCA CCATCGAGCT GACGATGCAG
TTGCTGGCGC AGAAGGGCAA ACGGCACGAC CGCCTGCGGG TGCGCACGTC CATGCCCAGC
TTCGCGATGA CGGTGGTGGT GCCGGCGCTC GGCGCCTTCT CGGCGGCCAG CGGGGCCCAG
GTCGACCTCA TCACGTCCCT GTCGCCCCCC CTGCCCTCCG ACGACTTCGA CGTACTCGTC
ACCCGCGACC TGAGCCTGGG CGGGACGGAG TCCTGGGAGC TGGTCCGCGA AGAGCTGGTC
TGCGTCGGCT CGCCATCCCA GGTGGCCGCG CACCGGTCGG ACGCCGTGGC GCACTGGCCC
ATGGTGGCGT CCAGGTCGCG CCCGGAGCTG CTCGCGTCGT GGGCCCTCGC CGCGAACCTG
CCGCCGGACA GCCTGCACGT CGTGGCCACG TACGACCATC TGTTCCTGGC GCTGACCGCC
GCCATCGGCG GCTCGGGATT CCTCGTCGTG CCCCGGCTGT TCGTGCTCGA CCAGCTCCGC
GACGGCACGC TCCAGCTGGC GGACGAGCGG GTCGTCAACT CGGGCGCGAG CTATGTCGCG
TACCTGAACG AGATGAGCTC GCACACGCAG CTCGCGCAGG ACTTCTGCCG GTGGCTGAAG
GCGCTGCTGA GAGATCGAAA GTGA
|
|---|
| Protein sequence | MPLKALRAFV AVGRHGKFTR AASALGITQG AVSRHIAVLE AFAGTALFIR RGATIEMTPA
GLQLFEAVKD AMSTIELTMQ LLAQKGKRHD RLRVRTSMPS FAMTVVVPAL GAFSAASGAQ
VDLITSLSPP LPSDDFDVLV TRDLSLGGTE SWELVREELV CVGSPSQVAA HRSDAVAHWP
MVASRSRPEL LASWALAANL PPDSLHVVAT YDHLFLALTA AIGGSGFLVV PRLFVLDQLR
DGTLQLADER VVNSGASYVA YLNEMSSHTQ LAQDFCRWLK ALLRDRK
|
|---|
| |