| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2907 |
|---|
| Symbol | |
|---|
| ID | 4669111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 3202388 |
|---|
| End bp | 3204598 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639824107 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_971249 |
|---|
| Protein GI | 120611571 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.341428 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.384956 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGGC TGACCGCCCG CGAACTGGCC GGCCTGCCCG GCATGCCCAC GTCCGAACGC
CGTACCCGGG ACAAGCTGGT CGCGCTCGGA GCGTCCTCTC GCCCACGCCC TGGCAGCGCG
GGCGGCGGCG GCCTCGAATA CGACCCGGCC TCCTTGCCTG CAGCAACCCG CGCCGCCCTG
GCCGCGCGCG TCATCTGCAC CAGCGGCAGC AAGGCCCTGG CCCTGGTGGA GCCGGCACCT
GTGGTGTCCT TCGCGCCGCC CGCTCCTCCG CCCGTGCCGC TCGCACCGCT GCCGGCCCCT
GCCCCTGGCC GGCGCCCGCC CAGCGACCAC GACAAGGCTT GCGCTGACGC ACGCATGGTG
CTGATCAACC AGGTTCTCGA GCTGGCAGCG TTCCATGGCG TGAAGAAGGC CTGCGCCATC
CTGGCCCTGC GTCTGGCGAG CGGCGAGGCG CCGAAGGAGC TGCAGGCCAC CGCCCGCACC
GCGAGCCAGC GCGCCCGCGG CGACGTGGTC AGCGCCCGCA CCCTCGAGCG CTACCGCTCC
ATCTACCGTG CCGAGGGCTG GTGGGGGCTG CTGCCTACGC CCGCACCTGT CACGGGCGCT
GCCCACGTCG ACCAGGACGT CGCCGCGGTG CTGGGTCTGT ACCACTCCCG CGACGCGCGC
TTCCGGAAGC TCTCCGGCGC GGCCAAGGAA GTTACCCGCC AGCTCGGCCG AGACTTCGAT
ACCTGGCGCG CGCTCTACGC CCGTGCCCGC CGTGCCCTGG ACAAGCTGGG CACGTCGCCC
GAGGCGAGCG TGGCGCTCAT CAAGGCCCGC CACAGCGGCA GCGAGCGCGA CGTGCGCCTG
CCCTTCAAAA AGCGCGACAC CAGCAGCCTC TCGCCTCTGG ACGTTTTCGT GATGGACGGC
CACCAATTCA AGGCGAAGGT GAGGCACCCG GACCACGGCG CGCCCTTCGC GCCTGAGCTG
ACGCTCGTCC TGGACGCCGC CACCCGGCGG ATCATGGGCT GGTCTGTATC CCTCTCCGAG
AACGTGCTCG CGGTGGGCGA CGCGCTGCGG CACGCCATCG CGCAGCACGG CATCCCCGCA
GTGCTCTACA CCGACAACGG CAGTGGCGAA ACCGCCAAGG CCATGGACTG CCCGGTCGAC
GGCTTCACGA AGCGCCTGGG CATCGACCAT CGCACCGGCA TCCCCGGCAA GCCGCAGGCC
CGCGGGATCA TCGAGCGTTC GTGGCAGACC CATGCCATCA ACGCCGCACG CAAGTTCGGG
AGTTTCCAGG GCTCCGACGT CGACGGCGGC GAGTTCCGCA AGGTCGCGGC CGAGTTGGCG
AAGGAGCAGC GCGCCCTGCG CCGTGCGCAA GAGACAGGCG AGGTCGTTCG CCTCTCGACC
AAGTGCCCGA CCTGGGCGCA GTTCATCGAC GAGATCGAGC GCATGCTGGC CGAGTACAAC
GGCCAGCACC GCCACCGCAG CCTGCCCAAG CGGCCGGACG GCAAGCACAT GACGCCCGAC
GAGGCCTGGG CGGCGAAGTT CGACGCGAGC CTGCAGCACA AGCCCTCCCA GGTCGAGCTG
CGAGAGCTGT TCATGCCCGC CGTCCTGCGC ACCGCCAAGC GCGGCCAGGT CACGCTCTTC
AACCAGGAAT ACCAGGCGCC CGAGCTGATG CGCCGCGACG TCGACGGCCG CGAGGTCAGC
GTCCGCTACG ACATCCACGA TCCGATGTGG GTGCGCATCT ACAGCCTGGA CGGCGAGTAC
ATCTGCGACG CGCAGTGGCA GGCCAACCGC ATCGACTTCA TGCCCAAGGC GGTCGTGCAG
ATCGCCCGCG AGCGGCGTGT CGCCGCCACG GTCAAGCGCC GCGAGCAGCA GATCGAAACC
GCATTACGCG AGCTGGGCGA CACGGTCCAA CCCGCACCCC TTTCCCTGCC GGAGCCGAGC
GCGCCTTTCA TGGTCGTGCC CTCCATCCCG GAGGCTTCTC CCTCCCTCTC CTCCCTCCCT
TCCTCCGGGG TCGAGGTCGC GCAAGCGGCT TCGGGCAGGC CTTTCTTCGA TTCGCTCGGC
GAGCGCTACG AGTGGCTCAT GGGCCACCGC GACGCCTGGG ATGAGGACGA CAGGCGCTGG
GTGCTGGACT ACGTCGCGAG CGACGACTAC GAGGCCCTGG CCGACTACTA CGAGGGGCGC
GGGCTGGGAT GGCCACGCGA TCCACAGCAG GTTTTTAAAG GCGCTCTGTG A
|
|---|
| Protein sequence | MTWLTARELA GLPGMPTSER RTRDKLVALG ASSRPRPGSA GGGGLEYDPA SLPAATRAAL
AARVICTSGS KALALVEPAP VVSFAPPAPP PVPLAPLPAP APGRRPPSDH DKACADARMV
LINQVLELAA FHGVKKACAI LALRLASGEA PKELQATART ASQRARGDVV SARTLERYRS
IYRAEGWWGL LPTPAPVTGA AHVDQDVAAV LGLYHSRDAR FRKLSGAAKE VTRQLGRDFD
TWRALYARAR RALDKLGTSP EASVALIKAR HSGSERDVRL PFKKRDTSSL SPLDVFVMDG
HQFKAKVRHP DHGAPFAPEL TLVLDAATRR IMGWSVSLSE NVLAVGDALR HAIAQHGIPA
VLYTDNGSGE TAKAMDCPVD GFTKRLGIDH RTGIPGKPQA RGIIERSWQT HAINAARKFG
SFQGSDVDGG EFRKVAAELA KEQRALRRAQ ETGEVVRLST KCPTWAQFID EIERMLAEYN
GQHRHRSLPK RPDGKHMTPD EAWAAKFDAS LQHKPSQVEL RELFMPAVLR TAKRGQVTLF
NQEYQAPELM RRDVDGREVS VRYDIHDPMW VRIYSLDGEY ICDAQWQANR IDFMPKAVVQ
IARERRVAAT VKRREQQIET ALRELGDTVQ PAPLSLPEPS APFMVVPSIP EASPSLSSLP
SSGVEVAQAA SGRPFFDSLG ERYEWLMGHR DAWDEDDRRW VLDYVASDDY EALADYYEGR
GLGWPRDPQQ VFKGAL
|
|---|
| |