Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_2278 |
Symbol | |
ID | 4666585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 2507174 |
End bp | 2508007 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 639823483 |
Product | tRNA pseudouridine synthase C |
Protein accession | YP_970630 |
Protein GI | 120610952 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0554113 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000285246 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGCTTC CGAACGCCCC CCGCCATCCG CCCCTGGCCA TCCTCCGGCA GGACGACGAC CTCGTCGCCG TGTACAAGCC CGCCGGCTGG CTCGTGCACC GCACGGGCCT GGACGCGGGC GAGACCCGCT TCGTGATGCA GGCGCTGCGC GACCAGCTCG GCCGCCGGGT GTACCCGGTG CACCGGCTCG ACAAGGGCAC CTGCGGAGTG CTGGTGATGG GGCTGCACGC GGAGGCAGCC CGCGCGCTGT CGCAGGCCTT CGAGCAGCAC CGGGTGGACA AGCGCTACCT GGCCCTGGTG CGCGGCCATG CACCGGACCG GGTGCAGGTG GACCATGCCC TGCGCCCGGA CGATGCGCCG CCCGATGCCG CCGTGCAGCC GGCCCGCACG GCGCTGCGCT GCCTGGCGCG GCTGGAGCTG CCCGAGGCCA GCGATGCGCG CTTCGCCACC ACGCGGGCCT CGCTGGTGGA AGCCCTGCCG GAAACCGGCC GCCGCCACCA GATCCGCCGG CACCTCAAGC ACATCGCCCA TCCGATCCTG GGCGACGCCA CCCATGGCAA GGGCCCGCTG AACCGCTGGT GGGCGCAGCG GCTGGGTCTG CAGCGGCTCT GGCTGCACGC CTGGCGGCTG GCGCTGCCGC ATCCGGCGAC GGGCGAGACG GTGGTGGTGG ACAGCGGCCT GCGGGGCGGG CCGCTGCCCG GCACGACGGC TGCGCCGGGC GGGGCGGGCC CGGCGGAGAT GCCGGCGGCC GCGCCCGACC TGCACGACTG GCAGGCGCGC GTCCTCAGCC TCGACTGGGT CCCCCGCGGC GATGCAGCCG CCCCGGGACG CTGA
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Protein sequence | MPLPNAPRHP PLAILRQDDD LVAVYKPAGW LVHRTGLDAG ETRFVMQALR DQLGRRVYPV HRLDKGTCGV LVMGLHAEAA RALSQAFEQH RVDKRYLALV RGHAPDRVQV DHALRPDDAP PDAAVQPART ALRCLARLEL PEASDARFAT TRASLVEALP ETGRRHQIRR HLKHIAHPIL GDATHGKGPL NRWWAQRLGL QRLWLHAWRL ALPHPATGET VVVDSGLRGG PLPGTTAAPG GAGPAEMPAA APDLHDWQAR VLSLDWVPRG DAAAPGR
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