| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2002 |
|---|
| Symbol | |
|---|
| ID | 4668215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2178214 |
|---|
| End bp | 2179518 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639823213 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_970360 |
|---|
| Protein GI | 120610682 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0749036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0034214 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTTT CCGCCCCCGC CCCGGACTCC CCGCCCGACG CCACCGCCAT GCGTGCCTCC
GCGCCGCCGC CCGCGGGCGA CCCGCCCGCC GAACCACCGC CCGCCGGGGA TCCACCGCCG
GCCTCGCCGC CGGCAGGCGA CCCGCCCGCG CCGGCCCCCG GCCCGGCGGA GCCTCCGCCG
CCACCGGCAG GCGCCTCGCC ACCGCCCCCC TTCGTGCTGC ACATGCCCGT GGATGTGCGC
AACCTGTCGC TCGCCCTGCT GGCGCTCTTC GCCGCCGTGG CCCTCCTGCA CTGGGCCAGC
GCCGTCTTCA TTCCATTGAT GTTGAGCCTG CTGCTCACCA TCGCGCTGCA GCCCATCGTG
ACGGCGCTGC GGCGCTGGTA CATCCCGCGC TGGCTCAGTG CCGGCGTTCT GCTGCTGGGC
ATCGTCGGCG GCCTCGGCGG CACGGCCTGG TCGCTCTCCG ACGGCGCGGC CGAACTGGTG
GACTCGCTGC CCGTGGCCGC GCGCAAGGTA CGGGATGCCA TGCGGACGAA CATGCGCGGG
CCGAGCCCGC TCGACACCAT GCAGAAGGCC GCCAGCCAGA TCGAGCAGGC CGCCACCGAA
AGCATCCCGC CCCAGACGCG GCGCGGCGTG CAGCGCGTGG TGATCGAGCG CGCGCCCTTC
AACATCCGCG ATTACGTATG GACCGGCACC GTGGGCCTGG TATCGGCCGC GGGCCAGCTC
ACCGTGGTGG TCTTCCTCAC CTTCTTCTCG CTGGCCTCGG GCAACCTCTT CCGCCGCAAG
CTGGTGCGCA TCGCGGGCCA GAGCCTCGAG CGCCGCAAGA TCACCATGGA AGTGCTCGAC
GACATCACCG GACAGATCCA GCGCTACCTG CTCGTGCAGG TGGCCACCAG CGTCCTGGTG
GGCATCGGCA CCGGCGTGGC CTATGCCCTG CTCGGGCTGG AGAACGCGGC CGTCTGGGGC
GTGGTGGCCG GCGTGCTCAA CCTCGCTCCC TACGTCGGCT CCATCGTCGT GACGGGCGCC
TCCGCCCTCG TCGCCTTCCT GCAGTTCGGC ACCGTGGACA TGGCCCTGGC CATCGGCGGC
GCATCCCTGC TCATCCACAC CATCGTAGGC AACCTGCTCA CCCCCTGGCT CACCAGCCGC
ACCAGCCGCA TGAGCCCCGT CGCGGTGTTC GTCAGCGTGC TGGCCTGGGG ATGGCTGTGG
GGGTTGTGGG GAGTGTTGCT GGGGATTCCG GTGATGATGG TGGTGAAGGC TGTCTGCGAT
CGGGTGGAGG ATCTGAGGCC TATCGGGGAG TTGTTGGGGG ATTGA
|
|---|
| Protein sequence | MQLSAPAPDS PPDATAMRAS APPPAGDPPA EPPPAGDPPP ASPPAGDPPA PAPGPAEPPP
PPAGASPPPP FVLHMPVDVR NLSLALLALF AAVALLHWAS AVFIPLMLSL LLTIALQPIV
TALRRWYIPR WLSAGVLLLG IVGGLGGTAW SLSDGAAELV DSLPVAARKV RDAMRTNMRG
PSPLDTMQKA ASQIEQAATE SIPPQTRRGV QRVVIERAPF NIRDYVWTGT VGLVSAAGQL
TVVVFLTFFS LASGNLFRRK LVRIAGQSLE RRKITMEVLD DITGQIQRYL LVQVATSVLV
GIGTGVAYAL LGLENAAVWG VVAGVLNLAP YVGSIVVTGA SALVAFLQFG TVDMALAIGG
ASLLIHTIVG NLLTPWLTSR TSRMSPVAVF VSVLAWGWLW GLWGVLLGIP VMMVVKAVCD
RVEDLRPIGE LLGD
|
|---|
| |