| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1218 |
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| Symbol | |
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| ID | 4665499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 1340322 |
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| End bp | 1343138 |
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| Gene Length | 2817 bp |
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| Protein Length | 938 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 639822411 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_969583 |
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| Protein GI | 120609905 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0213212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACACA TGCATCGTTG GAAACTATCT GCTCTGGCCG CGGCGGCCCT CGTCTCGACC
GGCTTCTACA CCTCCGATGC CAGTGCCCTC TCCCTCGGGC GCCTGTCGGT CCAGTCGGCC
CTGGGCGAGC CGCTGCGGGC CGAGATCGAC CTGCCCCAGA TCACGGCCGC CGAAGCGGAA
TCCCTGCGCG CCGCGCCGGC TTCCGCGCAG ACGTACCGCG CGCAGGGCCT GGAGCTCTCC
CCCACCCTCA ACGACCTGCA GGTCCGGCTG CAGCGCAAGG CCGATGGATC CATGGTCCTG
CGCCTGACCA CCACCCGCCC CGTCAACGAC CCCTTCGTGG ACCTCGTGCT GGACACCAGC
TGGAACGCGG GCCAGCTCGT GCGCAGCTAC ACCCTGCTGC TCGACCCGCC CGCCAGCCGC
CGCGAGGCGC CCGCCCCCAC CGCCACCGCG CAGGCGGGCG CGGCCCCTTC GCCCGTGCCG
CAGGCCCCGT CCCGCCCGGC AGTGCCCGCG CCGCAGCCGC GCGCCGAGGT TCCGGCCCCG
TCTTCCGCGG CAGCACCTGC GCCGGCCTCA CCGCCACCGG CCCGCCCGCA GCGCCCCGCC
GCCGCGCCGG CACTGGCACC CGCGGCAGCG TCTGCGGGCG CCGCAGAGAG CGTGCTGGTA
CGCCCCGGCG ACACGGCCGG CCGGCTGGCC GGCACCTACC GCCCTGCCGG GGTCTCCCTG
GACCAGATGC TGGTGGCCAT GATGCGCGCC AACCCGGACG CCTTCATCCG CGGCAACGTG
AACCGCATGA AGGCGGGCGC CGTGCTGCAG ATGCCGAACG AGACGCAGGC CCGTGCCACG
CCGCCGGCGG AAGCGCGGCA GATCATCGCC GCGCAGAGCC GCGACTTCAA CGAATTCCGC
CGCCGGCTCG CGGGCGCGGC CCCTTCCGCC GAGGTGGCCG CGGCAGAACG CTCGGCCAGC
GGCCGCGTGC AGACGCAGGT CGAAGACCGC AAGGCCGCGA CCGCCGCGCC CGACCGGCTC
ACGCTCTCCA AGGGCGCCAT GCGCGGCCAG CGCGCCGCCG AGGAGCAACT GGCACGCGAC
AAGCAGGCCG GGGCCGACTC CGCCCGCATG GCCGAGCTGT CCAAGAACAT CTCCGAACTG
AACAAGCTGG GAGCCGCTTC CGCACCCGCG GGCGCACCCG CGCCGTCCGC TGCCGCCTCG
GCCGCGCAGC CCGGCCGCAT CGCCGTGCCG GTCGGCACCC CTGCGGCCTC GGTGCCGGCC
CCCGCGGCAT CCGCGACCGC TCCCGCGCCG GCCCCCGCGC CGGCGGCCAG CGCACCCTCC
GCGGCACCGG TTGCCGCTGT GGCTTCGGCA ACGGCATCCG CTCCGGCGCC GGCTCCAGCG
CAAGAAGCGG CGGCCTCCGC GCCAGCCGTG GCCGAGGCCC CGGCCTCCGA GGCCTCGGCC
GCTGCAGCGC CCGCCCCGGC TCCGGCCGCG CGCCCGCAAA CGCCTCCCCC GGCCGCGCCG
CCGGAAGAGC CCGGATTCCT GGACTCCCTG CTGGAGAACC CGATGTTGCC CCTGGCCGGG
GGCGGCCTGC TGGCCCTGCT GCTGGGCTAT GGCGTCTATC GGACGGTGCA GAACCGGCGC
AACCGCAATG CGGTGGACAG CTCCTTCCTC GAAAGCAAGC TGCAGCCGGA CTCCTTCTTC
GGCGCGAGCG GCGGACAGCG GGTGGACACT GCCAGCAGCC AGCTCACCAC GGGGGCATCG
TCCATGGCGT ACTCGCCCAG CCAGCTCGAC GCGGGCGGCG ACGTGGACCC CGTGGCCGAA
GCCGATGTCT ATCTGGCCTA CGGCCGTGAC CTGCAGGCGG AAGAAATCCT CAAGGAGGCC
TTGCGCCACA GCCCCGACCG TACCGCGGTG CACGTGAAAC TGGCAGAGAT CTACGCCAAG
CGCCAGGACC GCAAGGCGCT CGGCGCCGTG GCCCAGGACG TGTTCCGGCT GACCGACGGG
CAAGGCATGG ACTGGAACCG CGTCGCGGAC CTCGGCCGCA GCATCGACCC GGAGAATCCG
CTGTACCAGC CGGGGGGCCG CCCCCCGATG CTGGACGACG ATGCCGCGCA CAGCCTGCCT
GCCGAAGGAT TCCCCAGCAC GCTGACCGAC GGCCGCGCGG TTGCTGGCGC CGCCGCCGGG
GCAGCTGCAG CCACCGCAGC AGCGATGCCG CCCGACCTCG ACCTGGACCT GGATCTCGAC
CTGCCGGACG ATGCCCTGAC CGAAGCGCCT GCCCAGCCGC CTGCGGCGCC CGGCGCCTTC
GCAGCGGCGA CGGCTGCAGC CACGACGCCA TCTCCGGCCA GCGCCGCACC GGCGCCGGCA
GAGGCTGCGG AGCCGGTGCT CGAGTTCGAC CCGTCGCCCA CCTCTCCGCT CCCGATGGCC
GGCAGCGCCG CTCCGCAGTC CGCGCCGGCT CCGGAACTGG ACTTCCCCGA TGATCTGTCG
CTGGCAGACT CGGCCCGCGC CTCGCTGGAG CCGGAGGCCG CACCCGCTTC GGCCCCCGTT
CCCCTCGAAT TCGACCTGGG CGATCTGTCG CTGGACCTGG ACGCGCCCTC CGCCGGCCGC
GTGGAGCCGT CCACCGCTGG AGCAGAACCT GCCCCCGCCG CCGCGGAGCC TGGCGAAGCA
ATGGGCGATG CCGCCGGACT GCCGGACGAC CCGCTGGCCA CCAAGCTGGC GCTGGCCGAA
GAGTTCAATG CGATCGGGGA CGCCGAAGGC GCTCGCACCC TGGTCGAGGA AGTCATCGCG
GAATCCTCGG GCCCGCTCAA GGCCCGGGCA CAGCGCCTGC TGGCCGAACT GGGCTGA
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| Protein sequence | MAHMHRWKLS ALAAAALVST GFYTSDASAL SLGRLSVQSA LGEPLRAEID LPQITAAEAE
SLRAAPASAQ TYRAQGLELS PTLNDLQVRL QRKADGSMVL RLTTTRPVND PFVDLVLDTS
WNAGQLVRSY TLLLDPPASR REAPAPTATA QAGAAPSPVP QAPSRPAVPA PQPRAEVPAP
SSAAAPAPAS PPPARPQRPA AAPALAPAAA SAGAAESVLV RPGDTAGRLA GTYRPAGVSL
DQMLVAMMRA NPDAFIRGNV NRMKAGAVLQ MPNETQARAT PPAEARQIIA AQSRDFNEFR
RRLAGAAPSA EVAAAERSAS GRVQTQVEDR KAATAAPDRL TLSKGAMRGQ RAAEEQLARD
KQAGADSARM AELSKNISEL NKLGAASAPA GAPAPSAAAS AAQPGRIAVP VGTPAASVPA
PAASATAPAP APAPAASAPS AAPVAAVASA TASAPAPAPA QEAAASAPAV AEAPASEASA
AAAPAPAPAA RPQTPPPAAP PEEPGFLDSL LENPMLPLAG GGLLALLLGY GVYRTVQNRR
NRNAVDSSFL ESKLQPDSFF GASGGQRVDT ASSQLTTGAS SMAYSPSQLD AGGDVDPVAE
ADVYLAYGRD LQAEEILKEA LRHSPDRTAV HVKLAEIYAK RQDRKALGAV AQDVFRLTDG
QGMDWNRVAD LGRSIDPENP LYQPGGRPPM LDDDAAHSLP AEGFPSTLTD GRAVAGAAAG
AAAATAAAMP PDLDLDLDLD LPDDALTEAP AQPPAAPGAF AAATAAATTP SPASAAPAPA
EAAEPVLEFD PSPTSPLPMA GSAAPQSAPA PELDFPDDLS LADSARASLE PEAAPASAPV
PLEFDLGDLS LDLDAPSAGR VEPSTAGAEP APAAAEPGEA MGDAAGLPDD PLATKLALAE
EFNAIGDAEG ARTLVEEVIA ESSGPLKARA QRLLAELG
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