| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0844 |
|---|
| Symbol | |
|---|
| ID | 4668672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 914907 |
|---|
| End bp | 916577 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639822043 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_969216 |
|---|
| Protein GI | 120609538 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.153781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGC CCGCGCAATC CCCCTGGTTT TCGCCCCTGC TGGCCTGCGG CGCCGCCGTG
GCCATCGCAT TGCCTTTCCT GTACGGACAC ACGACGACGC CGCTGTCCAA TTTCTGGCCC
CTGGCCGTTT CCGGCCTGTG CGCCCTCGTG GTGGCGGCCG CCCTGGCCGC CGCCTGGTCG
TGCCAGCCAG CCGGCGCGGC GGGCGACGGC CTGCGCGAGG GGGCGGCCAG GGCGGTCGCG
GCCGGCATGC TGCTCGCCGG GCTGGCCGGC GCCGCCATCG GCCTGGCCCA GTTCTTCTGG
GGCGATCCCG GCTGGGCGCC CTGGATCTAT CCCTCCACGC ACGGCGTCGC CATGGGCAAC
CTGCGCCAGC GCAACCAGCA GGCCACGCTG CTGTGCATGG GCGCCTGGGC GCTCGCCTGG
TGGGTGGCGC GCACGCACGG CGCGCCGCCG CCGGGCGGCG GGGGCCGGCG CCTGCGGCCC
GCGTCCGTGG CGCTGGGGGT GCTCGCCTTC TGGGCGCTCG CGCTGCTCGC GGCCGGCGCG
GCGGCCACGG CGTCGCGCAC CGGGGCGCTG GAATGGGGCT GCATGCTCGT CCTGCTGCTG
CTCTGGCGCC GCTCCCTGGG CGCGCCGGCC CTGGCCCTGG GCATGGCGGG CATCGCGCTC
TATGCCCTGT TCTCCGGGCT GCTGCCCATC CTGCTGGAGC GCTGGACGGG CTTCGCCATG
GACGGCCTGT TCGCCCGCTT CTCGGCGCCC GAGCATGCCT GCGACAACCG CCGCGTGCTC
TGGTCCAACG TGCTGCACCT GATCGCCCAG CGGCCCTGGA CGGGATGGGG TTGGGGCGAG
CTGTCCTACG CCCACTACAT CACCCAGTAC CCCGGCAAGC GCTTCTGCCT GCTGGTGGAC
AACGCCCACG ACCTGCCGCT GCACCTGGCC GTGGAACTGG GCCTGCCTTT CGCCCTGGCC
GCCTGCGGCC TGGCGCTCTG GCTCGTGTGG CGCGCGCGGC CCTGGCGGGA AACCGACCCG
GCCCGGCAGC TCGCTTGGGG GCTGCTGGCC ATCGTCGGCG TGCACAGCCT GCTGGAGTTC
CCGCTCTGGT ACGGGCCCTT CCAGCTGGTG ACGGCCTGCG CGCTCGCGCT GCTCTGGCCC
CGCTGCTGGC GGATGCCGGC GCGCGCGGCC CTGCGCGTCC CGCTGCTGTG CGCCGCCGGG
CTGGCGGCGG GCTTCTGGCT GGCCGGCATC GCGTTGCTGG TGCGCGACTA CCACCGCGTC
TCGCAGCTCT ACCTGGCCGT GGACCAGCGC GATCCCGCCT TCCGGGACGA CACCGCGCGG
CGCGTCGCCG AATCCACCGT GTTCTTCCGC GACACCCTGG ATTTCGCCGT GCTCACCACC
CTGCAGCCCA CGCAGGACAA CGCCGTGCGC ATGCACGCCC TGTCCAGCCG TCTGCTGCAC
TACTCGCCCG AGCCCCGCGT CATCGAGGCA CTCATCGACA GCGCCGCCCG GCTCGGCCTG
GACAGCGAGG CCGACTTCCA TGCGCGGCGC TACCGCGACG TGTATCCGCA GGAATACGCC
ACCTGGCTGG CCAGGCGGCC GGCGCCGGCT TCCGCGGTCC AGCCGGCGAC GAGCCTGTCC
GGACCACGGC CGGGCCTTCT CGGACCGCGG CCGAGCCGCC CCCTGCGCTA G
|
|---|
| Protein sequence | MTAPAQSPWF SPLLACGAAV AIALPFLYGH TTTPLSNFWP LAVSGLCALV VAAALAAAWS
CQPAGAAGDG LREGAARAVA AGMLLAGLAG AAIGLAQFFW GDPGWAPWIY PSTHGVAMGN
LRQRNQQATL LCMGAWALAW WVARTHGAPP PGGGGRRLRP ASVALGVLAF WALALLAAGA
AATASRTGAL EWGCMLVLLL LWRRSLGAPA LALGMAGIAL YALFSGLLPI LLERWTGFAM
DGLFARFSAP EHACDNRRVL WSNVLHLIAQ RPWTGWGWGE LSYAHYITQY PGKRFCLLVD
NAHDLPLHLA VELGLPFALA ACGLALWLVW RARPWRETDP ARQLAWGLLA IVGVHSLLEF
PLWYGPFQLV TACALALLWP RCWRMPARAA LRVPLLCAAG LAAGFWLAGI ALLVRDYHRV
SQLYLAVDQR DPAFRDDTAR RVAESTVFFR DTLDFAVLTT LQPTQDNAVR MHALSSRLLH
YSPEPRVIEA LIDSAARLGL DSEADFHARR YRDVYPQEYA TWLARRPAPA SAVQPATSLS
GPRPGLLGPR PSRPLR
|
|---|
| |