| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0474 |
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| Symbol | |
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| ID | 4667255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 508687 |
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| End bp | 510738 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639821681 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_968855 |
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| Protein GI | 120609177 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAA TTTCCGCCCC CCGACCACGG CATGCAGCCA CCGGCATGAC CGGCAGCGTG
CTGGCCGGCG CGGTGCTCGC TCTGGGCATG GCCGGCCTGC CCGCCGCCCA GGCCGCCTCG
CTGCGGCTGA GCGCCAGCCT CTCGAGCCTG CCCTCGGCGG GCGCAGGCGC CGCCCTGGCC
GTACCCGCCG CGGAGCTGGC CACGGCCGGC ACGGGCGCAG CGCCCTCCAG CCCGGCCGCC
GCGCCCGCCC CGGCCCAGCG CAGCAACACG CTGCAGAAGG CCCCGCCGCG CAAGCACAGC
TCCTACCACG CACTGGCAGC GGCGACCTTC TCGGCAGGCG CCGTCGGCGC AGCCGCCGCC
AGCGCGCCCG TTCCGCCCTC CACGGCGCCC GTGGCGATAC CGAGCATCCC TGCCGCCCGG
GCACTGGAGA CGCTCGCGCC CGCCTCGCGG GCTTCCGACG CCCTCAACCG CGGCCGCTTC
GTGTACCGCG CCGAGAACAA GCGCCTGACG GACGTGCTGC AGGATTTCGC CGCCAGCCAG
GGCATCCCCG CCGTGGTGGC GGACGGGCTG GACGGCATCG TCAACGCGAA CTTCGACGCG
AGGCCCCGGG AGTTCCTCGA CAGCGTGGCG CGCGCCTACA ACATGCTCTG GTACCACGAC
GGCTCGGCGC TGTATTTCTA CCCGGGCAAG TCCATCCAGA GCCGCATGTT CCGCATCAAG
GGATTCAGCC GCGACCAGCT CACGGCCATG CTGCAGTCCC TGGACGTGGG TGACAAGCGC
TACCCCATCC GCTTCGACGC GGCCAGCAGC ACGATCTATG TGTCCGGCCC GCCCCGGCAC
GTGGAACTGG TGAGCTCCGC GCTGGAGGCC CTGGATGCCG GCGTCACGGC CAGCGCCGAG
CGCACGGTGC GCGTCTTCTC CCTGCAGTTC GCCTCCGCCA GCGACCGCTC GATGGGCGAC
TCCACGGTGC CCGGCGTGGC CACCACGCTG CGCAAGCTCT ACAGCAAGGA TGACGGTGAA
GGCCTGGCGA CGTCCAAGGC GACGAGCGCC GAGGTGATCG AGAAGATCCA GCAGCAGACG
CGCCGCAAGA TGAGCGCCTA CGTGCCCGTG CCCGCGGCCA ACCAGTTCCT GCCGCCGCTG
CCGCGCGCCA ACCCCTCCGA AGGCATGCGT CCGCCCGAGC CCGTGTCCCT GCCCACCGCC
ACCGCCGCGG ACAAGGCCGA GGAGGCACCG CCCCGGTTCG AGGCCGACGA GGGCACGAAC
TCCGTCGTCG TGTACGGCCG GGCCGACCGG ATGGACGAAT ACGAATCGCT GATCCGCCGC
CTGGACCAGA AGCCGCAGCT CGTCGAACTG GAGGCCACGA TCATCGAGGT CAACTCCGAC
AGCGTGGATG CGCTGGGCGT GAACTGGTCG CTGCGCGCCG GCACGAGCAG CATCTCCACC
AACCTGCCGG GCCCGAGCAC GCCGGCCGCG CTCAGCACCA TCGTGCTCGA CGCGGGCCGC
CACCTGCTGG CCAACGTCAA CGCGCTGGAA GCGCAGGGCA AGGCGCGCAT CCTGTCCAAG
CCCTCGGTGC TGGGTGTCGC CAACCGGGCG GCGGTGATGC GCGAGAAGCG CGTGGCCACC
GTGCGCGTCG CGGGGAACCT CGAGGCCAAC CTCTTCCAGA TCGAGGCCGG CACGCTGCTG
CAGATGACGC CGCAGGTCAC CCCGGTGGAT GGCAAGAACA ACATCAAGCT GAGTCTCTAC
ATCGAGGACG GCGCGTTCGA GACCAACGTG GTGGACCAGA TCCCCCTCGT CAAGAAGACC
GAGATCCGCA CGGAGGCCCA CGTCCGCGAA GGCGAGAGCC TGCTGATCGG CGGCATCACC
GTCGAATCGG AAAACACGCA GGACAACGCG GTCCCGGGCC TGTCCAAGCT GCCGGTCGTG
GGCGGGGTCT TCCGCAACAC GGAGCGCCTC ACCCGCCGCA CCGAGCGCCT GTTCCTGATC
ACGCCGCGCG TCATCGCGCA GGACGCACCG ACCACCGTTT CCTCGATCTC TCCGGAGGTT
CGCAAGCCAT GA
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| Protein sequence | MPKISAPRPR HAATGMTGSV LAGAVLALGM AGLPAAQAAS LRLSASLSSL PSAGAGAALA
VPAAELATAG TGAAPSSPAA APAPAQRSNT LQKAPPRKHS SYHALAAATF SAGAVGAAAA
SAPVPPSTAP VAIPSIPAAR ALETLAPASR ASDALNRGRF VYRAENKRLT DVLQDFAASQ
GIPAVVADGL DGIVNANFDA RPREFLDSVA RAYNMLWYHD GSALYFYPGK SIQSRMFRIK
GFSRDQLTAM LQSLDVGDKR YPIRFDAASS TIYVSGPPRH VELVSSALEA LDAGVTASAE
RTVRVFSLQF ASASDRSMGD STVPGVATTL RKLYSKDDGE GLATSKATSA EVIEKIQQQT
RRKMSAYVPV PAANQFLPPL PRANPSEGMR PPEPVSLPTA TAADKAEEAP PRFEADEGTN
SVVVYGRADR MDEYESLIRR LDQKPQLVEL EATIIEVNSD SVDALGVNWS LRAGTSSIST
NLPGPSTPAA LSTIVLDAGR HLLANVNALE AQGKARILSK PSVLGVANRA AVMREKRVAT
VRVAGNLEAN LFQIEAGTLL QMTPQVTPVD GKNNIKLSLY IEDGAFETNV VDQIPLVKKT
EIRTEAHVRE GESLLIGGIT VESENTQDNA VPGLSKLPVV GGVFRNTERL TRRTERLFLI
TPRVIAQDAP TTVSSISPEV RKP
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