| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0452 |
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| Symbol | |
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| ID | 4668522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 488239 |
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| End bp | 490302 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639821659 |
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| Product | HrcV family type III secretion protein |
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| Protein accession | YP_968833 |
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| Protein GI | 120609155 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0695404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAC GATTCGATTC CACCCTGGTC AACGACCTGA CGATGGCCGG CTTTCTCGTC
GGCGTGATCG CGCTGATGAT CCTGCCGCTG CCCACCCTGC TGATCGACTC GCTGCTCGCG
ATCAACCTCA GCATCAGCGT GCTGCTGCTG ATGACCACCC TGTTCATACC GGACGCGGTC
TCGCTCTCCA CCTTCCCATC GCTGCTGCTG TTCACCACGC TGTTCCGGCT GTCGCTGAAC
ATCGCTTCGA CCAAGGCCAT CCTGCTGCAC GCCGACGCGG GCCACCTGAT CGAGAGCTTC
GGCCAGCTCG TGGTTGGCGG CAACCTCGTG GTGGGCATCG TGGTGTTCCT GGTGATCACC
ATCGTGCAGT TCATCGTCAT CGCCAAGGGC TCGGAGCGCG TCGCCGAAGT CGGCGCGCGC
TTCACGCTCG ATGCGCTGCC CGGCAAGCAG ATGAGCATCG ACGCCGACCT GCGCGCCGGC
CTGCTCACCG CCGACGAGGC CAAGGCCAAG CGCGCCCGGC TCAGCATGGA AAGCATGCTG
CACGGCGGGA TGGACGGCGC GATGAAGTTC GTCAAGGGCG ACGCCATCGC GGGCCTCATC
ATCACGCTGG TCAACATCCT CGCCGGCATC GTGGTGGGCA TCCTTTACCA CAGCATGACC
GCCGGGGAGG CGGCCAACCG CTTCGCCGTG CTGTCCATCG GCGATGCCAT GGTCTCGCAG
ATTCCCGCGC TCTTCATCTG TATGGCCGCC GGTATCCTGA CCACCCGCGT GGCCGACGAG
CACCGCAAGA AGCCCACCTC CCTGGGCGAG GACATGACGG AGCAGCTCAC GCGCAATACC
CGCTCCATGT ACCTCGCGGG GGCCCTCACC CTGGGCTTCG CGGCCATTCC GGGCTTCCCC
GCCGTTCCGT TCTGCCTGCT GGCGGCGGGC CTCGTGGGCG GCGGCCAGTG GCTGTCGCGC
AGGCGCAAGT CGGCCGCCCC GGGCAGCGCC AAGACCCACT CCAAACCCAT CGCCTCCCTG
CTGCGCGAAG GCGGCAAGGG CGAGGGCACG GCCATCCAGC ACCGCGCGCC CGAGTTCGCC
AAGCCGCTGT CCATCCGCCT GTCCGATCCG CTCGCCCGCC TGCTCAATGC CGAGCGGCTC
GACCAGGCCC TGAACAAGGA ACGCGAGGGA CTGCAGACGC GGCTGGGGCT GCCCTTCCCC
GGCGCCGCGA TGTGGGTCTG GGACGGCCTC GAGGACCTGC GCTTCGACAT CCTCATCAAC
GACGTGCCCG TGGCCCAGCC CCGGTTGCCC GGCGACATGC TCCTGCTGCT GGACCCGCAG
TCCCCCCTGG CCGCGCAGGC CCAGCGGCAC GGCCCGCTGC TGGGCATGGA GGAGTCGCTC
TGGGTGCCCC AGACGGCCGT CCCGCCCGCC CAGCGCGCCG GGGCGTGCCT GGAGATCGAG
CAGGTGATCG CCCGCGAGGT GGTGGAGATG CTCCAGCGCC ATGCGCACCT CTTCATGGGC
GTGCAGGAAG TGCAGTGGAT CATCGAGCGC GCCACGCCGG AATACCCGGG GCTGGTGGCC
GAAGTGCAGA AGGTCATGCC GCTGCAGCGC ATGGCCGAGG TGCTGCGCCG CCTGCTGGAA
GAGCAGGTGC CCATCCGCAA CATCCGCAGC ATCTTCGAGA GCCTCATCAC CTGGGCCCCC
AAGGAAAAAG ACCTGCTGCT GCTCACCGAA TACGTGCGCT CCGACCTGGG CCGCTACCTC
GCGCACGAGG CCGGCGGCGG CCAGCGGCAC ATCTCGGCCA TCCTGCTCGC CCCGGAAATC
GAGCAGGCGA TCCGCGGCTG CATCAAGCCC ACGCCCGCGG GCAACTACCT CGCCATGTCG
CCGGACGATG CGCGCGACAT CACCGACCGC ATCGCGGCCG TCGCCCGCTC GTCGCCCGCC
ACCGGCGTGG CCCTGGTCAC TTCCATGGAC ATCCGGCGCT ATGTCAAGAA AATGATCGAA
GGACGCATCG ACTGGCTGCG CGTGTACTCC TTCCAGGAGC TGGGCAGCCT GATCGAGCTG
CGGCCGATCG GCCGCGTTGC ATAG
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| Protein sequence | MAKRFDSTLV NDLTMAGFLV GVIALMILPL PTLLIDSLLA INLSISVLLL MTTLFIPDAV
SLSTFPSLLL FTTLFRLSLN IASTKAILLH ADAGHLIESF GQLVVGGNLV VGIVVFLVIT
IVQFIVIAKG SERVAEVGAR FTLDALPGKQ MSIDADLRAG LLTADEAKAK RARLSMESML
HGGMDGAMKF VKGDAIAGLI ITLVNILAGI VVGILYHSMT AGEAANRFAV LSIGDAMVSQ
IPALFICMAA GILTTRVADE HRKKPTSLGE DMTEQLTRNT RSMYLAGALT LGFAAIPGFP
AVPFCLLAAG LVGGGQWLSR RRKSAAPGSA KTHSKPIASL LREGGKGEGT AIQHRAPEFA
KPLSIRLSDP LARLLNAERL DQALNKEREG LQTRLGLPFP GAAMWVWDGL EDLRFDILIN
DVPVAQPRLP GDMLLLLDPQ SPLAAQAQRH GPLLGMEESL WVPQTAVPPA QRAGACLEIE
QVIAREVVEM LQRHAHLFMG VQEVQWIIER ATPEYPGLVA EVQKVMPLQR MAEVLRRLLE
EQVPIRNIRS IFESLITWAP KEKDLLLLTE YVRSDLGRYL AHEAGGGQRH ISAILLAPEI
EQAIRGCIKP TPAGNYLAMS PDDARDITDR IAAVARSSPA TGVALVTSMD IRRYVKKMIE
GRIDWLRVYS FQELGSLIEL RPIGRVA
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