| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1260 |
|---|
| Symbol | |
|---|
| ID | 4664290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | + |
|---|
| Start bp | 1539333 |
|---|
| End bp | 1542812 |
|---|
| Gene Length | 3480 bp |
|---|
| Protein Length | 1159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639819491 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_966706 |
|---|
| Protein GI | 120602306 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.843901 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATTTCG CCGCACTCGT CCGCAAGTTG GCCAGCAAGG GCTGTGGACA CATCGAAGTA
ACACGTAGCG GGATGGCGAC GGCAGCGCGT CTGGGCAACG CCGTGCTCGA CGCCGGTCGC
AGTGCCGTCA TGGTCGTCCG CGATGCGGAA GAGCTTGCCC TCGCCCGCGG TCTGCTCACC
TTGTTCTCGC CTGACGCCTC GGCTGGTGAC TCCCCGCTGG TGAAGCCCCG CTGGGAATCG
CGATGGGTGG TCATGCCGCA GCACCCACTC GGGGCGCGCA ACCGTGATGC GTGGGCAAGC
CGCATGGCAG CCCTCTTTGC CCTTGGGCAG AAACGTGTGC CGCAAGGCGT GCTCATCACG
GTCGATAACT TCCTCTCGAA ATTGCCCCCG GCAGACCTTT TCGCCTCGCA TGAGCTCACG
CTTGCCTGCG GCGACGAGAT GGCGCCCGAG TTGGTGCTCG AACAGGCGGT GGACTGGGGA
TTCGACAGGG TGCAGATGGT TTCGCGCCCC GGCGAAATCG CCGTGCGTGG CGATATCGTC
GATATCTACC CCCCAGGCTA CGAACGTCCT CTCCGTTTGG AGTTCTTCGG CGAGACGCTG
GAGGAGATTC GCCTTTTCGA TGCGTCGAAC CAGCGCTCTC TCGGCAAGCT GGACGAGATG
GTGCTCCTGC CCGTGTCGCC CGTCGTGCTC AGTGCCGAAC TGCGCAGCAA GGCCACAGCG
CGGTGGAAGC GACTTTTCTC CAAGGGCATG CTCACCGAAG AACAGTACGC CGGGCTGCTT
CGCGGTATCG AGCGCCATGG CGAAGGGCTC ATGCCCGGTG CCTACTACGA GGCACCTACG
GTCGTCGAGG AATGGCTCCC GCGCGATGCC GCATGGATAC TGCCTGGCCG GAAGGAACTG
GTCGACGCTG TCGAGGCGGC GCAGCAGAAT TGGGAGGCCC TTTTCGACAA GCAGGCCGAG
GAGGGCGGGG CAAGACAGCC CCGGGGACTC GTCCTGCGTG ACGCGGCACC CGTGCGCCAG
TTGTACGAAG AGAAGGACTC CGCGGGATTC GAGCCGCTGG TGATGGGGGT CGAGCGCACT
GGCGTGGACA TGCCGGAGCG CAAACTCCAC GGGTTTGTCG ACCTGTTCCC GGCCCCTGAT
GCACGAGACC GGCCATGGCA AGCGCTTGTC GCGGGACTCC ACAGGTTCGT GGCGACACAT
GCCCGTGTGC TGCTCTGCTT CGGCAATGAA CGTGGCAGGC GCAAGTTCCT GAAGCTAGCC
GAGCAGGACG GTATCACGCC GACGTTGCGC TACGACCCCA AGGGCAGGGG GCTGATGGCG
GTCGTGGCCC CGTACCGTGC GGGCGTCGAA CTCGCGTGGG ACGGAACGCT TGTCATCGGT
GAGGATGTCC TCCAGCCCAA GACCGACCGC TCGGCACGTG TCGCCTCCGG TGCCTTCCGT
GGACTCGACA AGCATGAAGG GCTTCAGCCG GGCGACCTGC TCGTACACCG TGATTATGGT
GTGGCCCGTT TCGTGGGTCT TGAGCGCATG GACCTTGGCG GGGTCGGTAA CGATTTCCTG
CTGCTCGAGT ATGCAGGTGA CGACAGGCTC TATCTTCCGG TCGACCGGCT TTCACTGGTG
CAGCGTTTCA AGGGGGCCGA TGACACGAAG CCCTCGCTTG ACAGGCTTGG CGGCGGGGCG
TGGCAGTCCA GCAAGGACAA GGCCCGCAAG GCCATCGAAA AGATCGCCGC CGACCTCGTC
GAGATGTACG CCTACCGCAA GATTGCCAAG GGCTACACCT ATGGCCCCAT CGGGGAGTTG
TACCGCGAGT TCGAGGCGTC GTTCGGCTTC GAGGAGACCC CCGACCAGGC GCGCGCCATA
CAGGACGTGC TCGAGGATAT GGACAAGCCC GTGCCCATGG ACCGCCTCGT ATGTGGCGAC
GTGGGCTTCG GCAAGACCGA GGTCGCGTTG CGCGCCGCCT TCCGTGCCGC CTCCGAGGGA
CGGCAGGTGG CCTTGCTCTG TCCGACGACG GTGCTTGCAG AGCAGCATTA CCAGACCTTT
CGCAGCAGGC TCGCGGGCTT CCCCGTCAAT GTCGGGATGT TGAGCCGTTT CGTGAGCAAG
CAGAAGCAGA CCGAAGTGCT TGCGGCTGCC GCCAAGGGGC ATGTCGACAT CCTCATCGGA
ACGCACAGGC TGCTGTCCGA TGACGTGCGA CTCCCCAACC TCGGTCTGCT CGTTCTCGAC
GAAGAACAGC GCTTCGGTGT GCGGCACAAG GAGAAGCTTA AGCAGTTCAG GCGCAACGTC
GATGCGCTGA CCCTGACGGC GACACCCATT CCCCGTACGC TTCAGTTGTC CATGTCGGGC
ATTCGCGAGC TTTCCGTCAT CGAGACCGCG CCCCCGGAAC GAAAGCCCGT GGCAACCGCG
CTCATCGAAC GTGATGATGC GGCCCTCAAG TCCATACTTG AGCGGGAGAT CGCCCGTGAA
GGGCAGGTCT TCTGGGTGCA CAACAGGGTG CAAGGGCTTG AACGCACGAC GGAATACGTA
CGCAAGCTCG TGCCGGACGC ACGGGTGGGC ATGGCCCACG GCCAGATGAC CGAACGCGCG
CTGGAAGAGA CCATGCACCG TTTCTGGCAT GGCGAACTCG ATGTGCTGGT GTGCACCGCC
ATCGTCGAAT CCGGGCTGGA CTTCCCGCGT GCCAACACCC TCATCGTCGA CCAGGCGCAG
ATGTTCGGCC TCGGCCAGCT GTACCAGTTG CGCGGACGCG TCGGGCGATC TGACAGGCAG
GCGTATGCCA TCTTCGTCGT GCCTGATGCG GACAACCTTT CCGACATCGC ACGCGAGCGC
ATGCGTGTCA TCCTCGATAT GGACTATCTC GGCGCGGGCT TTCAGGTCGC CATGGAGGAC
CTTCGTATCC GTGGTGCGGG GAACATCCTC GGCGAGGCCC AGTCCGGGCA CATGACGCGC
GTGGGGCTTG AGCTGTTCCT TGAGATGCTC GAAGAGGCCG TGACTCGCCT CAAGGGTGAC
CCGCCGCGCG AAAGCGTCGA GACGGAACTC AACATCGGCA TCCCCGCGCA TATCCCTGAA
GGCTACATCG AAGACGCCCG TGACCGTCTC CGGTTCTACA AGGCGCTGTC TTCGGCGACC
GATGCCGCAG CCCAGCAGGA CATCGAGATG GAGATGCGCG ACCGGTACGG TGTGTTCCCC
CCCGAGTTGG AGACGTTTCT CGCGTTGCTC GTTCTCAAGC GGCAATTGCG TCGCATGCAG
GTCCAGCGGG CGGACATCTA CCCCGACAAG GTGCGCCTCG TCTGGGACGA ACGTCAGACC
GCCGTGGATA TCGGCAGGCT CATCGAGTGG GTCGGCCAGC ATGCGGACAG GGCGAGACTC
CAGCCCCCTG CAACGCTCGA ATGGCGGCTT GACACCGGGC TTGCAGCCGG GGCACGACTT
GACGCGATGC GCGGCGAACT CTTCCGGCTT GTCCCCGATT CAACCCCTTC GTCGGCATAA
|
|---|
| Protein sequence | MDFAALVRKL ASKGCGHIEV TRSGMATAAR LGNAVLDAGR SAVMVVRDAE ELALARGLLT
LFSPDASAGD SPLVKPRWES RWVVMPQHPL GARNRDAWAS RMAALFALGQ KRVPQGVLIT
VDNFLSKLPP ADLFASHELT LACGDEMAPE LVLEQAVDWG FDRVQMVSRP GEIAVRGDIV
DIYPPGYERP LRLEFFGETL EEIRLFDASN QRSLGKLDEM VLLPVSPVVL SAELRSKATA
RWKRLFSKGM LTEEQYAGLL RGIERHGEGL MPGAYYEAPT VVEEWLPRDA AWILPGRKEL
VDAVEAAQQN WEALFDKQAE EGGARQPRGL VLRDAAPVRQ LYEEKDSAGF EPLVMGVERT
GVDMPERKLH GFVDLFPAPD ARDRPWQALV AGLHRFVATH ARVLLCFGNE RGRRKFLKLA
EQDGITPTLR YDPKGRGLMA VVAPYRAGVE LAWDGTLVIG EDVLQPKTDR SARVASGAFR
GLDKHEGLQP GDLLVHRDYG VARFVGLERM DLGGVGNDFL LLEYAGDDRL YLPVDRLSLV
QRFKGADDTK PSLDRLGGGA WQSSKDKARK AIEKIAADLV EMYAYRKIAK GYTYGPIGEL
YREFEASFGF EETPDQARAI QDVLEDMDKP VPMDRLVCGD VGFGKTEVAL RAAFRAASEG
RQVALLCPTT VLAEQHYQTF RSRLAGFPVN VGMLSRFVSK QKQTEVLAAA AKGHVDILIG
THRLLSDDVR LPNLGLLVLD EEQRFGVRHK EKLKQFRRNV DALTLTATPI PRTLQLSMSG
IRELSVIETA PPERKPVATA LIERDDAALK SILEREIARE GQVFWVHNRV QGLERTTEYV
RKLVPDARVG MAHGQMTERA LEETMHRFWH GELDVLVCTA IVESGLDFPR ANTLIVDQAQ
MFGLGQLYQL RGRVGRSDRQ AYAIFVVPDA DNLSDIARER MRVILDMDYL GAGFQVAMED
LRIRGAGNIL GEAQSGHMTR VGLELFLEML EEAVTRLKGD PPRESVETEL NIGIPAHIPE
GYIEDARDRL RFYKALSSAT DAAAQQDIEM EMRDRYGVFP PELETFLALL VLKRQLRRMQ
VQRADIYPDK VRLVWDERQT AVDIGRLIEW VGQHADRARL QPPATLEWRL DTGLAAGARL
DAMRGELFRL VPDSTPSSA
|
|---|
| |