| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_0969 |
|---|
| Symbol | |
|---|
| ID | 4664392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 1187710 |
|---|
| End bp | 1191471 |
|---|
| Gene Length | 3762 bp |
|---|
| Protein Length | 1253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639819192 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_966417 |
|---|
| Protein GI | 120602017 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
[COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0218073 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCAG CACCAACTCT GTTCGACCTG CCCTTCATGG TACAGGCTGG CATAGTGCTG
CTATTCTGGG GCACGCTGGC AGCCATCGCT GCGCGGCGTC GCCTTGACGC GCTCATCGGC
TACGGGGCTG TGGCCGATGC GGGCATCGCG CTCATCGGTT TCGGCCTCGG TTCAGCCACG
GCGACGACGG GGGGCATCCT CTTCGCAGCC TTCCAGTGTC TTGCACGGCT ACTTGCCTAC
GGTGCCCTGC GCCCGCTGAT GTCCAAGGCG GGTTCTGCCG AAGCCGACGC CCTGCGGGGC
ATACGCGAAG CCATGCCCGC CAGTGCCGTG CTCTATGGTT TCGGTATGTT CGCGGCACTG
GGCATCTCCC CTTTTCTCGT GCCTGAAGGG AGAATGCTGG TCACGGCAGC CGCCGTGCAG
TCGGGCGGGC TGCTGCTGCC CCTGCTCATG GCGCTGTCGG CAGCCATCAT GGCATGGCTC
ACCGTGGTCG CCACGCAGAC CGTCTGTCTT GAACACGGCC CGTGGGAAGC CTCAGGCATC
ACCCCCGAAC GCCTCCCCCT GCACCTCGCC CCTGTCGTTC TTGCGGTAGC GGGATGCGGC
ATAGGGGGAC ACGCCCTCAT GGTGGGTGCT GCAACATTCC TCGGGCATGC CCCCGAATCG
CTTCCCGCAC TGGCTGACGG ATGGCACCCG GCGGCACTCG TCCCCTACGC GGGGGCTTTT
TGCGTCTGGG CGGCTGGTGG CGTGGCACGC CCCTTCCGCA GCATCCTCGC CGTGGCGCTT
GCGGCTGCGG CCCTTGCGCT GGCATGGCAC GGCGCGGGAC TCGACCCTCT CGCGCGACTC
TTCGCCGTCA TCACCGGGGG CGTCTGCCTC GCCGTCACGG CCTACTCCGT GGGGTACATC
ACACACGCCC GTCACAGTTC CGGTTACTAC TTCTTCCTCA TGATCATGAC GGGGTCGCTG
ATGGGCCTCG TATCCACACG CTCTTTCGGC AGCTTCTACG GCTTCTGGGA ACTGATGACA
TGGTCGTCGT ACTTCCTTGT CGTGCATGAA GGCACCCCCC GCGCCTTCCG CGCCGGTGTG
AAGTACTTCG TCATGTGCGC TGCGGGTGCG ATGTTCATGC TTCCCGGGCT GCTCATGCTC
ACCAACGGCG GTTCGGCAGA CTTCGACGCC GTGACCACTG CCGTGCGCCA ACTCGACCCC
ATGCTGCTCA AGGCCGCCCT GCTGCTCACC CTCGCAGGCT TCGCGGTCAA GGCCGGTTTC
GTGCCCGTGC ACGGCTGGCT GCCCGACGCC CACCCCGTGG CCCCGTCCTC CATCTCCGGC
CCGCTGTCGG GCCTGCTGAC CAAGACCGGC ATCTACGGCA TCGTCCGCGT CCTGTTCGCT
ATATGCGGCA TGACCGTGCT GCTGCAGACC GGCGAAGGCA TCGCAGGCAT CTCGTGGATG
GGCGCGGCGG TGACGACGCT GGGCGTGCTC ACCATGGCCT ACGGCGAAGT CATGGCCTTG
CGGCAGGACG ACATCAAGCG CCTGCTCGCC TATTCCACCA TGGGCCAGAT CGGCGAAATC
GCCACCATCA TCGGCCTTGG CACATGGTTG TCGACCACGG GCGCGCTCGC CCACGTGCTC
AATCATGCCA TCATGAAGAA CCTGCTCTTC CTCTGCGCAG GTGCGCTGGT CATGCGCGCG
GGTCGCAAGC TTGAAGACCT CGCGGGCATG GGCCGCATGA TGCCGTGGAC GGCGGGCTGC
ATGATGGTGG GTGTGCTCTC CATCATGGGC ATGCCGCCCT TCGCCGGATT CGCCAGCAAG
TACCTCATGC TTCAGGGCGC GGTGCAGGCC GGGCACCCCG AACTCGCCGC CGCGCTTCTG
CTGGCGAGCC TTGCCGGGGC CGTGTACTAC ATGCGCATCA TCCGCGTGCT GGTCTTCATG
CCCCGCAAGG GACATCCGGT GCAGGAAGCA CCGTGGGCCA TGCGCCTGCC CATGCTGGTG
CTGGCGGGTC TTTGCGTGTT CCTCGGCATC GCGCCGCAGT ACGGACTCGC CCTCGTGACC
CCCGTGGCCG ACATGCTGGT GGCAGCAGGC AACCTCGCTC CGCAGACCCT GCCCTCGCTG
ACCGTAAGCT GGCCCCCCTA TGTGGTGCTG ACCATGCTCG GCGCGGCACT GCCCGCCCTG
CTGCGTCACA ATCGCAAGCT GGCCGGTTGG GTCACGTCCC TCGTCCTGCT GGTTGCCGCA
GTGGTCGCCG CCTTCACCGG GCGCGACCTC GACATGCTCT CGTACGGCTT CGTGCTGACA
GTCGCTGTCA TCGGCTGCCT CAACATGGTC TACGCCGTGG GCTACATGGA ACACAGCCAC
ACCCAGTGGC GGTTCTACAC GTTCTTCCTC TTCATGGTGG GGGGCCTCAT GGGTGTGGCG
GCAAGCCGCG ACCTGTACAG CTTCTTCACC TTCTGGGAGA TCATGAGTTC GTGGAGTCTC
TACTGCGTCA TCGTGCATGA GGAGTTCCCG GAGGCACTGC GCGAAGGCTT CAAGTACTTC
TTCTTCAACG TGCTGGGGGC GGCCTTCATG TTCCTCGGCG TGGTGCTGCT CACCGCAGGC
GCCGGCAGCC CGGCCTTCGA CGCCGTACAC GCTGCCCTGC CCTCCATGCC CGTCGGACTC
TCCGCCACCG CGGTGGGCCT CATGGTGCTG GGCCTCGTCA TGAAGGCGGC GCAACTGCCC
TTCCGCATCG ACGTGCAGAT GCACCCCGCC ACCGCGCCCA CGCCGGTCTC GGGTTACATC
TCCTCCGTCC TGCTCAAGAG CGCGCTCTTC GGCCTCGCCA AGCTGCTGCT GGCCCTTGGC
GGCGGCACGG TGCTGGTGCA GGCCGCCGGG TTCACCGACG GCATCGGCCT CATGCAGGTC
GTGGCGTGGG TCGGCGGCAT CACCATCGTC ATGGCGGCGC TTCTCGCCGT CCTGCAATCC
GACCTCAAGC TGGTGCTCAT CTACTCCACC GTGAGCCAGC TGGGCTACAT GGTGCTGGCC
TTCGCCCTCG GCACGCCGCT GGGCATGGCA GGGGGCCTGC TGCACCTCGC CAACCACGTG
CTGTTCAAGG ACCTGCTCTT CCTCGTGGCG GGCGCACTCA TCCTGCAGAC GCACAAGCAC
TCGCTCGACC AGCTTGGCGG CATAGGCCGC AAGATGCCGG TGACGCTGGG CGTCTTCGCC
ATCGGCGCAC TCTCCGTCGT GGGCGTGCCC CCCACCAACG GTTTCACCTC GAAATGGATC
ATCTACCACG CCCTCATGCA GCAGGGTGAA GTGATGCTCG CCATCCTCTC GCTGGTGGGA
AGTGTGCTGA CGCTGGCGTA CTTCGCCAAG TACCTGCACG CCGCCTTCCT CGGTCAGCCC
TCGCCCGACA TCGACCACGT GCAGGAGGCC CCGCGCGTGA TGCTGGTGCC CATGCTCGTC
CTCGCTGCGG GTTGTGTCGT CACCGGCTTC TTCCCCGGCC TGCTGCTTGC GCCCATCGCC
ACCATGCTGA CGGCCCTCGG CCTCACCGCG CCCGAAGTCG CCCCGTGGGG CCTCGCCAGC
GGCGCAGGCG CATGGAACGC CACCGCGGTT GCGGTACTCG CCACCGTGGC CGCAGCCTTC
GGCTGGGGCA CGTTGCGCCT GCTCACCCGC AACAGCCGGG TGACGACGGT GCACACCTGC
GGTGTCGACC TCGGCCCAGA CGTGGCCCGC ATGAACTCCG GCAGCATCTA CGGCGCGCCC
GTGGCCCTGC TGCGCGGCAT GACCGCCTCC AAGGAGCGCT AG
|
|---|
| Protein sequence | MQPAPTLFDL PFMVQAGIVL LFWGTLAAIA ARRRLDALIG YGAVADAGIA LIGFGLGSAT
ATTGGILFAA FQCLARLLAY GALRPLMSKA GSAEADALRG IREAMPASAV LYGFGMFAAL
GISPFLVPEG RMLVTAAAVQ SGGLLLPLLM ALSAAIMAWL TVVATQTVCL EHGPWEASGI
TPERLPLHLA PVVLAVAGCG IGGHALMVGA ATFLGHAPES LPALADGWHP AALVPYAGAF
CVWAAGGVAR PFRSILAVAL AAAALALAWH GAGLDPLARL FAVITGGVCL AVTAYSVGYI
THARHSSGYY FFLMIMTGSL MGLVSTRSFG SFYGFWELMT WSSYFLVVHE GTPRAFRAGV
KYFVMCAAGA MFMLPGLLML TNGGSADFDA VTTAVRQLDP MLLKAALLLT LAGFAVKAGF
VPVHGWLPDA HPVAPSSISG PLSGLLTKTG IYGIVRVLFA ICGMTVLLQT GEGIAGISWM
GAAVTTLGVL TMAYGEVMAL RQDDIKRLLA YSTMGQIGEI ATIIGLGTWL STTGALAHVL
NHAIMKNLLF LCAGALVMRA GRKLEDLAGM GRMMPWTAGC MMVGVLSIMG MPPFAGFASK
YLMLQGAVQA GHPELAAALL LASLAGAVYY MRIIRVLVFM PRKGHPVQEA PWAMRLPMLV
LAGLCVFLGI APQYGLALVT PVADMLVAAG NLAPQTLPSL TVSWPPYVVL TMLGAALPAL
LRHNRKLAGW VTSLVLLVAA VVAAFTGRDL DMLSYGFVLT VAVIGCLNMV YAVGYMEHSH
TQWRFYTFFL FMVGGLMGVA ASRDLYSFFT FWEIMSSWSL YCVIVHEEFP EALREGFKYF
FFNVLGAAFM FLGVVLLTAG AGSPAFDAVH AALPSMPVGL SATAVGLMVL GLVMKAAQLP
FRIDVQMHPA TAPTPVSGYI SSVLLKSALF GLAKLLLALG GGTVLVQAAG FTDGIGLMQV
VAWVGGITIV MAALLAVLQS DLKLVLIYST VSQLGYMVLA FALGTPLGMA GGLLHLANHV
LFKDLLFLVA GALILQTHKH SLDQLGGIGR KMPVTLGVFA IGALSVVGVP PTNGFTSKWI
IYHALMQQGE VMLAILSLVG SVLTLAYFAK YLHAAFLGQP SPDIDHVQEA PRVMLVPMLV
LAAGCVVTGF FPGLLLAPIA TMLTALGLTA PEVAPWGLAS GAGAWNATAV AVLATVAAAF
GWGTLRLLTR NSRVTTVHTC GVDLGPDVAR MNSGSIYGAP VALLRGMTAS KER
|
|---|
| |