Gene Dvul_0120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_0120 
Symbol 
ID4663750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp145073 
End bp147592 
Gene Length2520 bp 
Protein Length839 aa 
Translation table11 
GC content67% 
IMG OID639818314 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_965571 
Protein GI120601171 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.554495 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.207208 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGTAT CGCCAGATGG CCCCATGAGC CTTTACGGGG TTCTCGCCCC TCAACTGCCA 
GCACTGGTTC CGGCGGTCCT GCTGGCCTGC CTTGGCGTCT GCATCGTGCT CATCGCACGC
TTGCGTCGGC AGGTCGGGGC GGCACGCCAT GAGAACGACC TGCTCAAGGC CATGCGCATT
GCCTCGCCTG TGCCGCTGTG CGTCAAGGAC GTCCATGGCA GGTATCTCGG CTGCAACCAT
GCCTTCGAAC TGCTCTTCGG CGTGCGCGAG GCCGACATCC TCGGAGGCAC GGCCGCCGTG
GAGCTGCCCC AGCCCCTCGC TGCCGGCGAA TCCGCAGCCG AAGAGAACAT GGCCCGATTC
GGCACCTCAC GCCAGACCTT CATGAGCGCC TATGAGTCGC CGGGTGGCCC GGCCCTTGTC
CTGCAAGTGG ATTGCGCCAC TTGGCGCGAC GCCTCCGGCG TGCACAAGGG GCAGGTCAAC
GCCTACGCGG ACATCACCCC CCTCAAACGG GCAGAGGCGG CCCTGCACGA AAGCGAAGCC
CGCAACCGCA TGCTGGTGGA AGAGGCGCCC ATATCCATCA TGAGCTTCGA CGCGGCAGGA
CACATCACCT TCGTCAACAA GTGGCACCTG CGTGTCTTCT GCCGCCACAG GGTCGACGCG
GGCTTCTTCA TCGGACGCAG GCTCGACGCC TTGCCCGGCC TTGCGCGCGC GGGGCTGTGC
GAAAGGGTCG CCCGTGTCCT GCATGGTGAA GAACTGGCCA TCCGCGAAGT GTACTTCCCC
GAATTCACGG GAGGGCATGA CGGCTGGGCC AGCATCCGCG GGGTCCCGAT ACACCGCGAC
GGTCAGATCG TGGGCGGCAT CCTCATCCGC GAAGACATCA CCGAACGCAA ACGCATGGAG
GAGGTTCTTC GCCAGCGCGA GGCGCTCGTC TCATCCATGC TGCGCAACCT GCCCATCGAC
TTCTGGGCGG CTGACGGGGA AGGCAGGATG TTGATGCAGA GCGACGAGAG CGTCCGCGTG
TGGGGGCACC TGCCCTCCGG CGTGGAACCT CTCACCGGTT CACCGCTCCA GTGGCGCAAC
TCCGACAGGT TCGAGCCCCG GGTCTTCGCG GGCGAGACGG TCGAGCGCGA GATCGACGTG
GCGCTCCCCT CCGGGCAGAT GCGCACCTTC AACGTCATCG CGGCCCCGGT GCGCTTGCAG
GGCGGCATCA CCGCCATGCT GCGGGTGAAC CTCGACGTCA CAGAACGCAA GCGCGTCCTC
GCCGAACTGC GCACCGCCCG CGACGCCGCG GAGGCTGCCA ACAAGGCCAA GTCCGAGTTC
CTTGCCCACA TGAGCCACGA ACTGCGCACG CCCCTCAACG GCGTCATGGG CATGTTGCAG
CTTCTCGACG AGCATGTCGC CGCACCGCAG GGCCGCGCAT GGCTCGACGT GGCCCTTGAA
TCCAGTCGCG CGTTGTTGCG CATCCTCAGC GACATTCTCG ACCTGTCGCG CATCGAGGCG
GGAAGGCTTG ACCTCATGCA GGAGCCGTTC ACCCCGGAAT CCGTGCTTGC CCCGGTCTTG
GTCTCGCTCC ACCGCACAGT CGAAGGCCGG GCAGTACGCA TCGTGAACGA GATGGACGAC
TCCATGCCGC CGGTGCTCGT GGGCGACCCG GGTCGCATCA GGCAGGTGCT GCTCAACCTG
CTGGGCAACG CCGCCAAGTA CACCGAACGC GGGGAAGTGC GGGTCGGGAT GCGTGTCCTG
CGCCGCAACG GCAAGGCGTT GCGGGTGCAC CTGCATGTCA CCGATACGGG GGTGGGCATC
GCCGATGAAC AGTTGCAACG CGCTCTCGAA CCCTTCGGCA GACTCCGTCA GGGTTCGGGT
CTGCCTCGCG GGGTGGGACT GGGCCTGCCC ATCGTGGTGC GCCTTGTGCG CCTCATGGGC
GGGACGCTGT GCATCGCCTC CGAACAGGGC GTCGGCACCG AAGTGCACGT GACCCTGCCC
CTTCTCGAGG CAAACGCCGG TGCGGTACCG GTGGCACCGG ACGTGGACGA AGCCGGAGGC
ATATGCTCCT TCGCGGCCTT CCGCTGTGCG GGAGTGGTGC CAGAGGCGGA CCGCCTTGCC
CCCGGCGAAG CCCCTTCCCC GGCGGTGCGC CATGTCCTGC TTGTGGAGGA CGACCCCGTC
AACCTCATGG CCGCCAGACG GATGCTCGAA AGGCTGGAAT GCAAGGTGAC GACGGCGACG
TGCGGGCAGG AGGCCCTGAA CGCATTGCGC TCTTCCGTCT TCGATGCCGT GTTCATGGAC
ATCCAGATGC CCGACTTCGA TGGCATAGAA GCCTTGCGCC GTATGCGGGC CAAGGGCAGC
GGCGTGCTGC GCCCGCAGAC GCCGGTGGTC GCCATGACCG CCTTCGCCAT GAAGGGCGAC
CGCGAGCGCT TCATGACCGA AGGCATGGCC GACTACGTGT CCAAGCCCGT GCTCATCTCC
GCCCTCAAGG ATGTGCTGGA GAGGCTTGCC GTCACGTCCC CCGGCACCTC CCGCACATAG
 
Protein sequence
MAVSPDGPMS LYGVLAPQLP ALVPAVLLAC LGVCIVLIAR LRRQVGAARH ENDLLKAMRI 
ASPVPLCVKD VHGRYLGCNH AFELLFGVRE ADILGGTAAV ELPQPLAAGE SAAEENMARF
GTSRQTFMSA YESPGGPALV LQVDCATWRD ASGVHKGQVN AYADITPLKR AEAALHESEA
RNRMLVEEAP ISIMSFDAAG HITFVNKWHL RVFCRHRVDA GFFIGRRLDA LPGLARAGLC
ERVARVLHGE ELAIREVYFP EFTGGHDGWA SIRGVPIHRD GQIVGGILIR EDITERKRME
EVLRQREALV SSMLRNLPID FWAADGEGRM LMQSDESVRV WGHLPSGVEP LTGSPLQWRN
SDRFEPRVFA GETVEREIDV ALPSGQMRTF NVIAAPVRLQ GGITAMLRVN LDVTERKRVL
AELRTARDAA EAANKAKSEF LAHMSHELRT PLNGVMGMLQ LLDEHVAAPQ GRAWLDVALE
SSRALLRILS DILDLSRIEA GRLDLMQEPF TPESVLAPVL VSLHRTVEGR AVRIVNEMDD
SMPPVLVGDP GRIRQVLLNL LGNAAKYTER GEVRVGMRVL RRNGKALRVH LHVTDTGVGI
ADEQLQRALE PFGRLRQGSG LPRGVGLGLP IVVRLVRLMG GTLCIASEQG VGTEVHVTLP
LLEANAGAVP VAPDVDEAGG ICSFAAFRCA GVVPEADRLA PGEAPSPAVR HVLLVEDDPV
NLMAARRMLE RLECKVTTAT CGQEALNALR SSVFDAVFMD IQMPDFDGIE ALRRMRAKGS
GVLRPQTPVV AMTAFAMKGD RERFMTEGMA DYVSKPVLIS ALKDVLERLA VTSPGTSRT