Gene Dvul_2997 details

Gene Information

• Locus tag: Dvul_2997
• ID: 4661922
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris DP4
• Kingdom: Bacteria
• Replicon accession: NC_008741
• Strand: -
• Start bp: 57173
• End bp: 59047
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 639813917
• Product: YscC/HrcC family type III secretion outer membrane protein
• Protein accession: YP_961196
• Protein GI: 120586851
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGTGCC TTCACGCGCC GTCACGGTGC GAGGCCGCAC CCGCCTTTCC GCACACCTAT 
TCGCACTATT CCGAACAGGA GCAACTGACC GCGCTGCTGG CCGACTTCGG GCGCACACAG 
GGCCTTGCCA CGTCGTTCTC GCCCGGTGTC ACGGGCACGG TCAGCGGCAG GTTCGAGGAC 
GTAGCCCCGG AGAAGTTCCT TCAGGGCATG AAGGCGGCCT TCGGCGTGTC GTGGTACCGC 
CTCGGCCCCA CGCTGCATTT CTACCATGAG GCCGAGACCA CGCGCATCTT CATCTCGCCG 
CGGGTCATGA GTGCCGAGTC GCTGTACCGC ATGTTGCGCC AGTCTTCGGT GCTGTCGCCG 
CAACTGCCCG CCGAACTCAT GCCCGGCGGC GCCATGGTGG TCGTCTCCGG CCCGCCCGCC 
TACCTCGACC AGATTCAGGC CGCGGTGACG GCCTTCGAAG AGGCCCAGAC GGGCAACTTC 
GGCATGAAGG TGTTCCCGCT CAAGTACGCG TGGGCCGAAG ACATCACCGT CAACAGCATG 
GACAAGACGG TCACCCTGCC CGGTGTCGCC AGCATCCTGC GGGCCATGGT CAGCGGGTCG 
CCCTCAAGCG CCACGCGCGT CACGCAAGAG ACCGCCACGG TGGACAAGCT TTCCGGCACG 
GGCCTCATCT CGCAGGGGCG TCAGCAGAAG GAGTCGGGCC AGTCGAATCA GGCGCAGCGC 
GGCGGGCAGG CCTCGCAGCA GGATTCGGGC GGGGCGCAGG ACGGTCAGCA GGTGAGCATC 
ATGGCCGACC CGCGCGTCAA CGCCGTCATC GTGCACGACG CCGTGTACCG GATGCCCTAC 
TACGAGTCGG TCATCGGCGA CCTCGACAGG CCGGTCGAAC TCGTGGAGAT ACACGCCGCC 
ATCGTCGACA TCGACACCAA CTTCAAGCGC GACCTCGGCG TCACCTATCA GGGTACGGTG 
GGCAAGGACC AGCGGTGGGC GGGCGGTGCC GACGTATCCA CGGGCACCGA CAAGTTCACC 
CCCCTGCCCG TACCCGGTGT ACCGCAGGGC AGCGGCCTGA CCCTCTCAAC CATCTACACC 
ATGGGGTCGG ACTACTTTCT CGCCCGCATC AACGCCCTCG AGAAGAACGG CGAAGCCCGG 
ATGCTGGGGC GGCCCTCGGT GCTGACCGTG GACAACGTGC AGGCCACCCT CGAGAACACC 
AGCACCTATT ATATACAGGT GCAGGGCTAT CAGGCCGTCG ACCTCTTCAA GGTCGAGGCG 
GGCACGGTGC TGCGCGTGAC ACCGCACATC ATCAACAACG ACGACGGCAC CGACGCCATC 
AAGCTGGTGG TGAGCGTGCA GGACGACCAG AACAACCAGA CCACGCCGAC CTCGACCTCC 
ACCACGCAGG CCATCCCGCC CATCAAGCAG ACGAAGATCA ACACGCAGGC CATCATCGGC 
GCGGGGCAGA GTCTGCTGAT TGGCGGCTAC TACTACGAAC AGAAGGCCAC CAGCGCCGAC 
GGCGTGCCCA TCCTCATGAA CATCCCGGTA CTGGGCAACC TGTTCAAGAC CCAGTCGAAA 
GAGAACAAGA GGATGGAACG CCTCATCCTC ATCACCCCCA AGGTGGTGCG CCTCGACAAC 
CTGCCGGGGA CCCCGCCACG GGTCGACGAC CCCGCCTTCC ACCGCACGGC CACCCAGTCG 
GACTATGCCG AACGCACCCC CACGCCGCCC CCGTCGCGCC GTAGCGGTTG CAGCCGCGCG 
CCCGACAATG CGCCGGAAGC GGCTTCGGGT GCGGCAGGTG GCACGGGAGG AACAGGGGTG 
ACAGCGAACA CAGAAGGCGG CACCACGCCC CAAGCGGCCA CATCCCCTGT CCCTGCGTAC 
GGAGTCGCCC CATGA 

 

Protein sequence

MLCLHAPSRC EAAPAFPHTY SHYSEQEQLT ALLADFGRTQ GLATSFSPGV TGTVSGRFED 
VAPEKFLQGM KAAFGVSWYR LGPTLHFYHE AETTRIFISP RVMSAESLYR MLRQSSVLSP 
QLPAELMPGG AMVVVSGPPA YLDQIQAAVT AFEEAQTGNF GMKVFPLKYA WAEDITVNSM 
DKTVTLPGVA SILRAMVSGS PSSATRVTQE TATVDKLSGT GLISQGRQQK ESGQSNQAQR 
GGQASQQDSG GAQDGQQVSI MADPRVNAVI VHDAVYRMPY YESVIGDLDR PVELVEIHAA 
IVDIDTNFKR DLGVTYQGTV GKDQRWAGGA DVSTGTDKFT PLPVPGVPQG SGLTLSTIYT 
MGSDYFLARI NALEKNGEAR MLGRPSVLTV DNVQATLENT STYYIQVQGY QAVDLFKVEA 
GTVLRVTPHI INNDDGTDAI KLVVSVQDDQ NNQTTPTSTS TTQAIPPIKQ TKINTQAIIG 
AGQSLLIGGY YYEQKATSAD GVPILMNIPV LGNLFKTQSK ENKRMERLIL ITPKVVRLDN 
LPGTPPRVDD PAFHRTATQS DYAERTPTPP PSRRSGCSRA PDNAPEAASG AAGGTGGTGV 
TANTEGGTTP QAATSPVPAY GVAP