| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_3103 |
|---|
| Symbol | |
|---|
| ID | 4657153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 3446723 |
|---|
| End bp | 3448411 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639813083 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_960364 |
|---|
| Protein GI | 120556013 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases
[COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGAT TCGACGACAA CATCCTGCCA CCCTCGGTCC TGATCTTCGA CTGGCACGGT
ACCCTGGTGG ACACCCATGA TGCCATGTTC AGCGCCATGG AGGAGATGTT ACCGCAACTG
GAAGAGCTGG GCCTCGTGGA GCAGTTGCTG CCTGAAGACC AGTGCCGCAC CGAAGACGAT
GCCCGGTTGG TGCGTTACAT TCGCATCTAT CGCCGATTGC ACCCGCGGAT TCTGGCTGAG
CGCCGGGTCT CCCGAACGGA TATTTTCAAC GCCATCTTTG GTGAGAACAA GGCTGCCAAG
CTGATCGCCC ATAAAGCCTA CAACCAGGCC TACCGGAAGT ACTTCGGCCA GGTGAAACCG
TTTCAGCCGG GCGCTTATGA GTATCTGTCG GCCCTGAAAG CCCTGGGCAT CAAGCTGGCG
GTGTGCACCA ACCGCAACCG GGAGTTCCTG GACAGGGAGT TGCAGATTGT CGACGAAGGC
CGCTGGCTGC ATTTGTTCGA TGCCACCGTG TGTGCTGATG ACGTCACTGA ATACAAGCCG
GATCCGGAGG TGATTCTCAA AGCGCTGGAA AAGCTGTCGA TCCAGGCGGA TGACCACGCC
TGGTATATCG GGGACAGCTA TGTGGACATG CTTACCGCAC ACCATGCCGG TGTGGCTGGA
GTGTTCTACA ACGGTGCCTG CTGGGAGCCC GACCGGGTCA GCGGCTGGTT CACCAAGCGA
GACGCCCCGA CCGCTGTTCT CGACAGCTTT GAAGATCTGA TGGATTTACT TGCCCTGCTG
GAACGTGAGC ATTCCGAAGC GTTTACCTCC AGCCCGGCAG AGGTGCGCCC GAAACCTTTC
CCGGCGCCAG AGCGGCCGGA GCCCCGCATC GAGCCTGACT GGCACCCGGC GGTGGTGAAA
CTGATTCGCC CGGCGGTGAT CCTGTTCGAC TGGCACGCCA CTCTGGTGGA CACGCTCGAT
GCCATGTACC ACGCGGTGGA TGACATGCTG CCGGATTTCC ACAAGCTGGG ATTGATGGAT
CGGATGGTGG CGCCGGAAGA CAGCAAAACC CCGGAAGATG CCCGCCTGGT GGCATACGTG
CGAGAGTTCG CCAAACTGCA CCCCAAGGTA AAGGCTGATC GCAAAATCTC CCGCACCGAT
ATTTTTGAAG TGCTATTCGG TGAGGATCAG GACGCCAAGC AGATTGCCCA CAAAGCCTTT
AATCATCACT ACCGGAATCA CTACGGCACC GTGAAAGCCT TCGAGCCCAG GGTGCGGGAA
ATGCTGGAAG GGCTACGCAA GCTGGGTATC CAGGTGGGCG TGATCACCAA CCGCGACCGG
GAGTTTTTCG AGCACGAACT GGCGGCGGTG GAAGATACCG GCTGGACACA CCTGTTTGAC
GTTAACGTGT GTGGTGATGA TACCCCGCTG CGCAAACCCC ACCCGGATCA ATTGCTGCTG
GCAGTGCAGA AGCTGGATTA CCCACCGGAC CCCAGTGTGT GGTACGTGGG CGACTCTACC
ACTGACATCA TTGCGGCTAA ACGGGCCGGT ATGACCGCGG TGTTCTTCAA CGGCGCCCAA
TGGGATTTGC CGTGGCTGAA CCGGATTTTT CCCGGTACTC ACAAACACCC GGACAAACCG
GATGTAGTGG TTAACGATTT CTCCGAGTTC TGGGCTCTGG TGCTGGCCTG CGAAGTCGGG
CCGCCCTGA
|
|---|
| Protein sequence | MSRFDDNILP PSVLIFDWHG TLVDTHDAMF SAMEEMLPQL EELGLVEQLL PEDQCRTEDD
ARLVRYIRIY RRLHPRILAE RRVSRTDIFN AIFGENKAAK LIAHKAYNQA YRKYFGQVKP
FQPGAYEYLS ALKALGIKLA VCTNRNREFL DRELQIVDEG RWLHLFDATV CADDVTEYKP
DPEVILKALE KLSIQADDHA WYIGDSYVDM LTAHHAGVAG VFYNGACWEP DRVSGWFTKR
DAPTAVLDSF EDLMDLLALL EREHSEAFTS SPAEVRPKPF PAPERPEPRI EPDWHPAVVK
LIRPAVILFD WHATLVDTLD AMYHAVDDML PDFHKLGLMD RMVAPEDSKT PEDARLVAYV
REFAKLHPKV KADRKISRTD IFEVLFGEDQ DAKQIAHKAF NHHYRNHYGT VKAFEPRVRE
MLEGLRKLGI QVGVITNRDR EFFEHELAAV EDTGWTHLFD VNVCGDDTPL RKPHPDQLLL
AVQKLDYPPD PSVWYVGDST TDIIAAKRAG MTAVFFNGAQ WDLPWLNRIF PGTHKHPDKP
DVVVNDFSEF WALVLACEVG PP
|
|---|
| |