| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_5778 |
|---|
| Symbol | |
|---|
| ID | 4645721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 6171560 |
|---|
| End bp | 6172330 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639809254 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_956549 |
|---|
| Protein GI | 120406720 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.397858 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAC GGGTGCCGGT GAATCTGTTG GACGGCCGCG CCGTGATCGT CACGGGCGCG
GGCCGCGGGG TGGGCCGGGG CATCGCGTCG GCGCTGACGG AGCGCGGGGC CGCGGTCCTC
GCCGTCGACC GGGACGAGCA ACTGCTGTCG GAGACCGCCG ACGGGCTCGG GGACACGGTC
CGGCCCCTGG TGGCAGACCT GCGCGAGCCG GGCTGCGCGA AGCGCATCGT CGCGGCAGCG
GTCGACGCGT TCGGCGCCGT GCACGGTCTG GTGAACAACG CCATCGCCAC CAACGAACCG
AAACCGTTCC AGGACATCAC CCGCGAGGAC TACGACCTGG TTTTCGACGT CGGTCCCCGC
GCCACCTTCG AGCTGATGCA GGCGGTGTAC CCGGTTTTCG TCGGCAACGG CGGCGGCAGC
ATCGTCAACC TCGGGTCGGG TTCGGGCACC ATGGGGAAGC CGAAGTTCGG CGCCTACGCC
GGCGCCAAGG AGGCGATCCG GGGGATTTCG AAAGCTGCTG CGATGGAATG GGCCCGAGAC
GATATCCGGG TGAACGTGGT GTGCCCGTTC GCCGAGTCCG ACGGCATCCG GCTGTGGCGC
GAGACGGCCC CCGAAGCCTA CGAACGCAGC CTGCGCACCG TGCCGATGGG CCGGCTCGGC
GACGTGGACA CCGACATCGG TCCGGTGGTC TGCTTCCTGC TCAGTGACGA GGCGTCGTTC
GTCACCGCCC AGACCGTCAT GGTCGACGGC GGGACCACCG GTTTCCGCTG A
|
|---|
| Protein sequence | MTSRVPVNLL DGRAVIVTGA GRGVGRGIAS ALTERGAAVL AVDRDEQLLS ETADGLGDTV
RPLVADLREP GCAKRIVAAA VDAFGAVHGL VNNAIATNEP KPFQDITRED YDLVFDVGPR
ATFELMQAVY PVFVGNGGGS IVNLGSGSGT MGKPKFGAYA GAKEAIRGIS KAAAMEWARD
DIRVNVVCPF AESDGIRLWR ETAPEAYERS LRTVPMGRLG DVDTDIGPVV CFLLSDEASF
VTAQTVMVDG GTTGFR
|
|---|
| |