| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_5086 |
|---|
| Symbol | |
|---|
| ID | 4644138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 5451345 |
|---|
| End bp | 5452478 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639808560 |
|---|
| Product | nifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_955863 |
|---|
| Protein GI | 120406034 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGGATCG GGCCGATCGC GTTGCACAGT CCAGTCGTGC TCGCGCCCAT GGCAGGTGTG
ACGAACGTCG CATTCCGCAC GTTGTGCCGT GAACTGGAAC TCAGCCGCGC AGGCACCGTC
AGCGGGCTGT ACGTGTGCGA GATGGTGACC GCCCGTGCCC TCGTCGAACG CCACCCGGTC
ACCATGCACA TGACGACGTT CGCGCCGGAG GAATCGCCGC GCTCGCTGCA GCTCTACACC
GTCGACCCGG CCAACACCTA CGCCGCGGCC AAGATGATCG TCGACGAGAA CCTGGCCGAC
CACATCGACA TGAATTTCGG CTGCCCCGTG CCCAAGGTCA CCCGGCGCGG TGGCGGCGCG
GCACTGCCCT ACAAGCGCCG GCTTTTCGGC CAGATCATCA GGGCCGCAGT GGCGGCGACC
GAGGGCACCG ATATTCCCGT CACCGTGAAG TTCCGGATCG GGATCGACGA CGCCCATCAC
ACCCACCTCG ACGCCGGGCG CATCGCGGCC GACGAGGGGG CCGCAGCGGT CGCGCTGCAT
GCCCGCACCG CGGCCCAGCG CTACTCGGGC AGCGCGGACT GGGAGCAGAT CGCCGCGCTG
AAAGCCCACG TCACGAATAT TCCGGTGCTC GGGAACGGTG ATATCTTCGA CGCTCGTGAC
GCGCTGGCCA TGATGGCCGC GACAGGCTGC GACGGTGTCG TGATCGGCCG GGGCTGCCTG
GGACGGCCGT GGCTATTCGC CGAGCTGTCC GCCGCGTTCA ACGGCACAGC ACCGGCGACC
CCGCCGACCC TCGGCGAGGT CGCGCAGATC ATCCGCAGGC ACGGCGAGCT TCTCGCTGCG
CACTTTGGAG AGGACAAGGG CATGCGGGAC ATCCGCAAGC ACGTGGCGTG GTACATGCAC
GGATTCCCCG CCGGGGCAGA CCTCCGTAGG TCGCTGGCAC TGGTCAAGAC GATTTCCGAG
CTCGACGACC TGCTCGATCA GCTCGACCCG GACGTGCCGT TCCCCGCCGC GGCCAACGGT
CCGCGGGGCA GGCAGGGCTC TGCCGCGTCG GTGACGCTGC CCGAAGGGTG GCTCGACGAT
CCGGACGACT GCACGGTGCC CGCCGGGGCC GACGTGATGC ATTCGGGAGG CTGA
|
|---|
| Protein sequence | MRIGPIALHS PVVLAPMAGV TNVAFRTLCR ELELSRAGTV SGLYVCEMVT ARALVERHPV
TMHMTTFAPE ESPRSLQLYT VDPANTYAAA KMIVDENLAD HIDMNFGCPV PKVTRRGGGA
ALPYKRRLFG QIIRAAVAAT EGTDIPVTVK FRIGIDDAHH THLDAGRIAA DEGAAAVALH
ARTAAQRYSG SADWEQIAAL KAHVTNIPVL GNGDIFDARD ALAMMAATGC DGVVIGRGCL
GRPWLFAELS AAFNGTAPAT PPTLGEVAQI IRRHGELLAA HFGEDKGMRD IRKHVAWYMH
GFPAGADLRR SLALVKTISE LDDLLDQLDP DVPFPAAANG PRGRQGSAAS VTLPEGWLDD
PDDCTVPAGA DVMHSGG
|
|---|
| |