| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_3388 |
|---|
| Symbol | |
|---|
| ID | 4644998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 3605074 |
|---|
| End bp | 3606255 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639806866 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_954191 |
|---|
| Protein GI | 120404362 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.645484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTG AGATCGACCC GCAACTGTTG GCCCGACTGA ACGCGCGCCG GACCTCCCGC
CGCCGGTTCA TCGGTGGCGG CGCCGCAGCC GCCGCGGGCC TGGCCCTCGG TTCGTCGTTC
CTGGCGGCGT GCGGGTCCGA CAGTGGAACG TCGAGCACCA CCTCGGAGGC CAGTGGCCCC
GCCAGCGGCA CCCTGCGCAT CTCGAACTGG CCGTTGTACA TGGCCGACGG TTTCGTCGCC
GCATTCCAGA CCGCCTCCGG CATCACCGTC GACTACAAAG AGGACTTCAA CGACAACGAG
CAGTGGTTCG CCAAGGTCAA GGAGCCGTTG TCGCGCAAGC AGGACATCGG CGCCGACCTG
GCCGTTCCGA CGTCGTTCCT TGCGGTGCGG CTGCATCAGC TCGGCTGGCT CAACGACATC
AGCGACGAAG GTGTGCCGAA CAAGAAGAAC ATCCGTCCGG ACCTGCTCGA GGCCAGCGTC
GACCCGGGCC GCAAGTTCAG CGCCCCGTAC ATGTCGGGCC TGGTCGGCCT TGCCTACAAC
CGCGCCGCCA CCGGCCGCGA CATCAAGACG ATCGACGACC TGTGGGATCC GGCGTTCAAG
GGCCGGGTCA GCCTGTTCTC CGACGCCCAG GACGGCCTCG GCATGATCAT GCTCTCGCAG
GGCAACTCGC CGGAGAACCC CTCCATGGAG TCGGTCCAGA AGGCGGTCGA TCTGGTCCGT
GAGCAGAACG ACAAGGGCCA GATCCGCAGG TTCACCGGCA ACGACTACGC GGACGACCTT
GCTGCGGGCA ACGTCGCCGT GGCACAGGCG TATTCGGGTG ACGTGGTCCA GCTTCAGGCG
GACAACCCCG ATCTGCAGTT CATCGTTCCG GAGTCCGGTG CGACGACATT CGTCGACACG
ATGGTGATCC CCTACACGAC GCAGAACCAG AAGGCCGCCG AGGCGTGGAT CAACTACGTA
TACGACAGGG CCAATTACGC GAAGCTGGTG TCGTACGTCC AGTACGTTCC GGTGCTGTCG
GACATGACCG AGGAACTGGA GAAGATCGAT CCGGCCGCTG CGGCCAACCC ACTGATCAAC
CCGCCCGCCG ACGTCCTGGC GAAGTCCAAG GGCTGGGCCG CACTCACCGA CGAGCAGACG
CAGGAGTACA ACACCGCGTA CGCCGCCGTC ACCGGCGGCT GA
|
|---|
| Protein sequence | MSREIDPQLL ARLNARRTSR RRFIGGGAAA AAGLALGSSF LAACGSDSGT SSTTSEASGP
ASGTLRISNW PLYMADGFVA AFQTASGITV DYKEDFNDNE QWFAKVKEPL SRKQDIGADL
AVPTSFLAVR LHQLGWLNDI SDEGVPNKKN IRPDLLEASV DPGRKFSAPY MSGLVGLAYN
RAATGRDIKT IDDLWDPAFK GRVSLFSDAQ DGLGMIMLSQ GNSPENPSME SVQKAVDLVR
EQNDKGQIRR FTGNDYADDL AAGNVAVAQA YSGDVVQLQA DNPDLQFIVP ESGATTFVDT
MVIPYTTQNQ KAAEAWINYV YDRANYAKLV SYVQYVPVLS DMTEELEKID PAAAANPLIN
PPADVLAKSK GWAALTDEQT QEYNTAYAAV TGG
|
|---|
| |