| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_2583 |
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| Symbol | secD |
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| ID | 4643828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycobacterium vanbaalenii PYR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008726 |
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| Strand | + |
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| Start bp | 2724253 |
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| End bp | 2726052 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639806065 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_953397 |
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| Protein GI | 120403568 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.321622 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.917688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCATCGT CTTCGACGGT TCACCCTGCC CGCTACCTGG CACTGTTCCT GGCAATGCTC
ATCGGCGCCT ATCTGCTGGT GTTTCTCACC GGGGACAAGA AGCCCGATCC GAAACTCGGG
ATCGACCTGC AGGGTGGCAC CCGCGTCACG TTGACGGCGC GCACGCCTGA CGGGTCACCG
CCGTCGCGCG AATCCCTGGA CCAGGCCAAG CAGATCATCG GCGCCCGCGT CGACGGTCTG
GGCGTCTCCG GCTCCGAGGT CATCATCGAC GGCCAGAACC TGGTCATCAC CGTCCCCGGG
GACGACACCA GCGAAGCCCG CAGCCTCGGT CAGACCGCGC GTCTCTACAT CCGCCCCGTG
GTGCACGTGA TTCCGTCCGC TGCGGCGGCG CCACCCGAGC AGGCAGGCCC GCAGGGCGTG
CCGCCGGGCG GAGTCCCAGG CGTGCCGCCG GGCGCGGTGC CCGGGCTGCC GCCGGGAGCG
GTGCCGCCGG GGGCCCCGCC GGGCGCGGTG CCCGGGCTGC CGCCGGCAGC GGTGCCGCCG
GAGGCCCCGC CGGCCTCCGA CACACCTGCT CCCCAGCCGC GGCCGTTCCC CCAGCAGCCG
GCTCCCACGC CACCGCCCGG TCCGTCACCG GCCCCCGGCC CGACCCCGCC GCCGGCGCCG
GGCACAGCAC CGCCCGCAGA CCAGGATGTC CCGCTGGCGA CCCGCATCCA GGACGAGAAG
CGGTTGCGGC AGAGTACCGA GCAGGCGATC CAGATCCTCG CGCTGCAGTT CCAGGCCACC
CGCTGTGGTC AGGAGGATGT GCTCGCCGGA AACGACGACC CGAATCTGCC GCTGGTGACC
TGCTCGCAGG ACGGCAACGA GGTCTACCTG CTGGACAAGT CGATCATCAG CGGCGAGCAG
ATCGCCAACG CCTCGTCGGG CTTGAATCAG CAGGCCGGTG AGTACGTCGT CGACGTGGAG
TTCAAGAGCG ACGCCGCCAA GGTGTGGGCG GACTTCACCG CCGCCAACGT GGGCACCCAG
ACCGCGTTCG TCCTGGACTC CCAGGTGGTC AGCGCTCCCG TCATCCAGGA GGCCATCCCC
GGCGGACGGA CCCAGATCAC CGGGCAGTTC ACCCAGACGA CCGCGCGCGA GTTGGCCAAC
GTCCTGAAAT ACGGCTCGCT GCCGCTGTCC TTCGAATCCT CCGAGGCCGA GACCGTCTCC
GCGACGTTGG GTCTGTCGTC GCTGCGGGCC GGCCTGATCG CCGGCGTGGT CGGCCTGGTG
GCCGTGCTGC TGTACTCACT GCTCTACTAC CGGGTGCTCG GAGTGCTGAT CGCGCTGTCC
CTGACCGCCT CGGGCGCCAT GGTGTTCGCG ATCCTGGTGC TGCTCGGCAG ATACATCAGC
TACACGCTGG ACCTGGCCGG TATCGCCGGT CTGATCATCG GTATCGGCAT GACCGCGGAC
TCGTTCGTGG TGTTCTTCGA GCGCATCAAG GACGAGATCC GGGAGGGACG GTCGTTCCGG
TCGGCGGTGC CCCGAGGCTG GGCCAGGGCC CGAAAGACGA TCGTGTCCGG CAACGCGGTC
ACCTTGCTGG CCGCTGCGGT GCTGTACTTC CTCGCCGTCG GCCAGGTGAA GGGCTTCGCG
TTCACCCTGG GGCTGACCAC CATCCTCGAC ATCGTCGTCG TGTTCCTGGT GACCTGGCCG
CTGGTGTACA TGGCGTCCAA GTCGACCCTG TGGGCCAAGC CGTCGCTCAA CGGGCTCGGG
GCCGTCCAGC AGATCGCACG CGAACGTCGA GCGGCCGCGA GCGCGGCGGG ACGGGGTTAG
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| Protein sequence | MASSSTVHPA RYLALFLAML IGAYLLVFLT GDKKPDPKLG IDLQGGTRVT LTARTPDGSP
PSRESLDQAK QIIGARVDGL GVSGSEVIID GQNLVITVPG DDTSEARSLG QTARLYIRPV
VHVIPSAAAA PPEQAGPQGV PPGGVPGVPP GAVPGLPPGA VPPGAPPGAV PGLPPAAVPP
EAPPASDTPA PQPRPFPQQP APTPPPGPSP APGPTPPPAP GTAPPADQDV PLATRIQDEK
RLRQSTEQAI QILALQFQAT RCGQEDVLAG NDDPNLPLVT CSQDGNEVYL LDKSIISGEQ
IANASSGLNQ QAGEYVVDVE FKSDAAKVWA DFTAANVGTQ TAFVLDSQVV SAPVIQEAIP
GGRTQITGQF TQTTARELAN VLKYGSLPLS FESSEAETVS ATLGLSSLRA GLIAGVVGLV
AVLLYSLLYY RVLGVLIALS LTASGAMVFA ILVLLGRYIS YTLDLAGIAG LIIGIGMTAD
SFVVFFERIK DEIREGRSFR SAVPRGWARA RKTIVSGNAV TLLAAAVLYF LAVGQVKGFA
FTLGLTTILD IVVVFLVTWP LVYMASKSTL WAKPSLNGLG AVQQIARERR AAASAAGRG
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