| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3254 |
|---|
| Symbol | |
|---|
| ID | 4626324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 4017367 |
|---|
| End bp | 4017825 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639798361 |
|---|
| Product | pilin, putative |
|---|
| Protein accession | YP_944540 |
|---|
| Protein GI | 119946860 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT CTTCAACAAA AAATTCACAG GGCATGACCT TACTGGAATT GTTAATTACT
CTTGCGATCA TTATTATTTT ATCCTCAATC GCCGTCCCTA GCTATCGTAC TTTTATGGCC
AATGAGCGTT TTGCCATCGC CAGCAATGAA CTGTATAACG CCTACCGCTT TGCGCGCAAT
GAAGCTATTA AAACCTCGAG TTCAATGACC CTGAAGCCAA AAACGGGGGG GTGGGTCAAT
GGCTGGCAGG TGACTGACAG CAGTGGCACT GTGCTTTTGG TCAGCAAAAA ACCCCATGAC
AGCATCACTG TCACTGGTGT TGCTGTGACG GTCAAGGGAA TGGGGGCATT ATCTGGCGGT
GGTGTAACAT TTTTGGTTGA AGGACTCGAT GGAAAAAGCA GTTGTTTATC GGTGTTATCC
AGCGGACAAA GCCAATTAAC CGACGAGGCC TGTCCATGA
|
|---|
| Protein sequence | MKFSSTKNSQ GMTLLELLIT LAIIIILSSI AVPSYRTFMA NERFAIASNE LYNAYRFARN
EAIKTSSSMT LKPKTGGWVN GWQVTDSSGT VLLVSKKPHD SITVTGVAVT VKGMGALSGG
GVTFLVEGLD GKSSCLSVLS SGQSQLTDEA CP
|
|---|
| |