| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2085 |
|---|
| Symbol | |
|---|
| ID | 4627007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 2535838 |
|---|
| End bp | 2538393 |
|---|
| Gene Length | 2556 bp |
|---|
| Protein Length | 851 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639797232 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_943434 |
|---|
| Protein GI | 119945754 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.56515 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA GAAGTAATAT CGGCATTCTT CGTTTGCCAG TTGACACTTT CCTTCGCCAC
ATCCCCGATT CAGCATCCGT TTCGCACACA ACGCTCAACA GTTTTGTGCG TGTGCGCGGT
GCCCGGGAGA ACAATCTGCA GAACGTCGAC GTGGATCTGC CCCGGGACGC GATAGTCGCC
TTCACCGGGG TGTCCGGCTC AGGCAAATCC TCCCTCGCCT TCGGCACAAT TTTTGCTGAG
GCCCAGCGAC GCTTTTTCGA GTCCGTCGCG CCGTACGCCC GGCGCTTGAT CCAGCAGGGC
CACACGCCCC GAGTAGATGA AATCACCGGC CTTCCGCCTG CCGTCGCGCT GCAGCAGCGC
AGGGGAACAC CCAGCTCTCG CTCAAGCGTG GGAACCGTCA CCACTCTCTC AAACTCCCTG
CGGATGCTTT ATTCCCGCAC CGGTCTATAT CCTGATGGTG CACCCCGCCT GGAGTCGGAC
TCCTTTTCAC CAAACACCGC CATGGGTGCC TGCCCAACAT GCCAGGGACT TGGAACAGCG
CATACTGTCA CCGAGGCATC GCTGGTGCTC GACCCTTCGC TGAGCATCAG TGAAGGTGCT
ATTACGGCCT GGCCCGGGGC GTGGCAGGGC AAGAACCTGC GCGACATCCT CAGCGTGCTC
GGCTATGACG TGGACACCGC CTGGAACCAG CTTTCCCGCA CTGACCGCGA CTGGATCCTG
TTCACCGAGG AACAACCTGT GGTCGAGATC ATGCCGGTGC GGGAACGACC TAGGCCCTAC
AAAGGAAAGT TCTGGAGCGC TAAGAGTTAT GTAATGCACA CACTCGCTGA CTCAAAGAGT
GCCTCGGTGC GTAAGCGTGT GCTCAAGTAT GTTAAATCGG GCCCGTGTCT TATCTGCGCG
GGAAGCGGGC TGCGCAGCGA AGCACTTGCG GTTACTTTCA ATGGCCACAC CATCGCCGAT
CTGAACGCCC TGCCGCTCAC CGAGCTGCGC CACGCGTTCG ACTATCTGGG AGTCGCCAAC
ACTGCAAGTG ACACAATCAC CAGCGACCTT ACTCGCCGTC TTGATGTACT GCTCGATCTT
GGCCTTGGAT ACCTGAGCCT GGGCCGCGCG ACGCCCACAC TCTCACCCGG TGAAATGCAG
CGTCTGCGCA TCGCAACCCA GTTGCGCGCC GGGCTGTTTG GTGTGATCTA TGTACTCGAT
GAGCCTTCCG CGGGACTGCA CCCGGCCGAT GCCGAGCCGC TCCTCGCTGT ACTCGAAGAG
CTGAAGTCCA GCGGCAATTC CGTTTTTGTC GTGGAGCACA ATATGGACGT TGTACGCCGT
GCAGACTGGG TGATCGACGT TGGCCCTCTC GCGGGGGAGC ACGGTGGGAA AGTACTCTAC
AGTGGACCAA CGGCCGGACT TGCAGATGTA CCCGCCTCCA TCACAAGGGA GTTTCTCTTC
GCAAATGAGC GCCCAATTCC GGCCACACGC GCACTGCGGG ATCCCATTGG CTGGCTCGGC
CTGACGGGCA TTACCCGTCA TAACCTGCGC GGTATCGACG CTGAATTTCC GCTCGGCGTG
CTGACGGCGG TCACCGGCGT TTCAGGCTCA GGTAAATCTA CCCTGGTAAG CCAGGTACTC
GCCGAGGCCG TTGGCCTGCA CCTTCACCCT GACGAAGATC CCATTGCAGG AACCGCATCT
ACTGGCTCGG CGACCGGAGA GAAGGACGAT CAGTCCGAGC CTAAACCCGT CGAAATCACC
ACGGTCAAGG CGATTACCGG GGCAGAGCCT ATCAACCGTC TGGTGCGCGT TGATCAGAAG
CCAATTGGTC GTACTCCACG CTCCAATCTC GCCACCTATA CTGGCCTGTT CGATGCGGTG
CGGACAACGT TCGCCGCGAT TCCCGAGGCG CGAAGTCGAA AATTCAGCCC TAGCCGGTTC
TCGTTCAATG TACCGGGTGG TCGCTGCGAG ACCTGCCTTG GCGAGGGATT CGTTGCGGTT
GGCCTTCTCT TTCTGCCGGG CAGTTACTCG CCCTGCCCCG ATTGCGGTGG CTCGCGATAC
AATCCTGAGA CGCTCGAAGT GACATACCGC AATAAGAATA TAGCCGAAGT GCTTGAACTC
ACAGTGGATG CGGCAGTGGT ATTCCTCGCC GATGTGCCCT CGGCACTGCG CAGTCTTGAA
ACCCTTAGCG AGGTGGGCCT TGGTTATCTG CGACTCGGTC AGCCCGCCAC CGAGCTTTCC
GGGGGCGAGG CACAGCGCAT CAAGCTTGCG ACCGAGCTGC AACGGGCGCG CCGCGGGCAC
ACCCTATACG TGCTGGATGA GCCCACCACC GGGCTGCACC CCGCCGATGT GCTGCTGCTC
CTCACCCAGC TCAACCGGCT TGTCGATGCG GGCAATACAG TGATCGTGGT TGAACACGAT
ATGGACGTGG TTTCTGCCGC TGATTGGGTG ATCGATATTG GTCCAGCGGG TGGTGATAAA
GGAGGCCACA TTGTGGCTGC CGGTACTCCC CACACTGTGG CCGTCCACCC CGCGAGCCGA
ACCGCACCCT ATCTGGCTCG ATGCGTATCA ACCTGA
|
|---|
| Protein sequence | MKKRSNIGIL RLPVDTFLRH IPDSASVSHT TLNSFVRVRG ARENNLQNVD VDLPRDAIVA
FTGVSGSGKS SLAFGTIFAE AQRRFFESVA PYARRLIQQG HTPRVDEITG LPPAVALQQR
RGTPSSRSSV GTVTTLSNSL RMLYSRTGLY PDGAPRLESD SFSPNTAMGA CPTCQGLGTA
HTVTEASLVL DPSLSISEGA ITAWPGAWQG KNLRDILSVL GYDVDTAWNQ LSRTDRDWIL
FTEEQPVVEI MPVRERPRPY KGKFWSAKSY VMHTLADSKS ASVRKRVLKY VKSGPCLICA
GSGLRSEALA VTFNGHTIAD LNALPLTELR HAFDYLGVAN TASDTITSDL TRRLDVLLDL
GLGYLSLGRA TPTLSPGEMQ RLRIATQLRA GLFGVIYVLD EPSAGLHPAD AEPLLAVLEE
LKSSGNSVFV VEHNMDVVRR ADWVIDVGPL AGEHGGKVLY SGPTAGLADV PASITREFLF
ANERPIPATR ALRDPIGWLG LTGITRHNLR GIDAEFPLGV LTAVTGVSGS GKSTLVSQVL
AEAVGLHLHP DEDPIAGTAS TGSATGEKDD QSEPKPVEIT TVKAITGAEP INRLVRVDQK
PIGRTPRSNL ATYTGLFDAV RTTFAAIPEA RSRKFSPSRF SFNVPGGRCE TCLGEGFVAV
GLLFLPGSYS PCPDCGGSRY NPETLEVTYR NKNIAEVLEL TVDAAVVFLA DVPSALRSLE
TLSEVGLGYL RLGQPATELS GGEAQRIKLA TELQRARRGH TLYVLDEPTT GLHPADVLLL
LTQLNRLVDA GNTVIVVEHD MDVVSAADWV IDIGPAGGDK GGHIVAAGTP HTVAVHPASR
TAPYLARCVS T
|
|---|
| |