| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1821 |
|---|
| Symbol | |
|---|
| ID | 4626174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 2209599 |
|---|
| End bp | 2210495 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639796995 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_943197 |
|---|
| Protein GI | 119945517 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.017871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.191942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ACGCAGTTCC AAATTTAAAC GATTTTTTTT CTGGTCATCT TATTGTAAAT
AAAGCTAGAA AAATTCTTTA TTGCAATAAT TATATTTGTG ATTTAAGTGA CCAGTCTGAT
AAAAGTCTGA TTGATAACCC CCTATCCAAA TTTGTTACCA AAGCATCTAA TATTTTTATT
GATAGTTATG TTTATCCACT ATTAATGCAT CAATCATGCG CACAAGAAAT CCAAATAACG
TGGATTGGGA AAAACGGAGA AACAATACCC GTTGTAGTGA ATATAAAGCT GGGGTCAGAA
GATATATCTT ACTGGTCACT TTACGTCTGT GAAAATCGAG ATAAGCTTCA CAGTGAGCTG
TTAAAAGCGA ATGAAAAGCT TGAAAAACAG TCTCAAGAGT TATTTCGTCT GGCAACAACA
GATCCCCTGA CCGGTTTATT GAACAGGCGC GAACTGCAAG TACAGGCCCA AAAAGTCACT
CATCAAGCTG CCAGAAACTT ATCAACATTT GCATTATTGT TTATTGATAT TGATTTTTTT
AAACGTGTTA ATGATACATA CGGCCATCCC GCTGGAGATA AGGTTTTAAT ATGCCTGGCT
AATATACTGA CTCAAGAACG AAGAGTAACT GATATAGTGG CAAGAATGGG AGGTGAAGAA
TTTGCATTAC TATTACCCAA TATTGATGAA GAAAATGCCT ATAAATTAGC CGAAAGATTA
AGGAAAAAAA TTGAAAAGCA AACAATAGAC CATATAAAAA TCACCGTAAG TATCGGCTTA
GTCGTCACGC GTAAAAACAC CCAAACAAAT TTTGATATAT TACTTGAATT AGCTGATCAA
GCACTTTATG AGTCCAAAGA ATGGGGACGA AACAGAACGC ATGTTGCTCA ACTTTAA
|
|---|
| Protein sequence | MKKNAVPNLN DFFSGHLIVN KARKILYCNN YICDLSDQSD KSLIDNPLSK FVTKASNIFI
DSYVYPLLMH QSCAQEIQIT WIGKNGETIP VVVNIKLGSE DISYWSLYVC ENRDKLHSEL
LKANEKLEKQ SQELFRLATT DPLTGLLNRR ELQVQAQKVT HQAARNLSTF ALLFIDIDFF
KRVNDTYGHP AGDKVLICLA NILTQERRVT DIVARMGGEE FALLLPNIDE ENAYKLAERL
RKKIEKQTID HIKITVSIGL VVTRKNTQTN FDILLELADQ ALYESKEWGR NRTHVAQL
|
|---|
| |