| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0428 |
|---|
| Symbol | |
|---|
| ID | 4625441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 541492 |
|---|
| End bp | 542100 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639795624 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_941887 |
|---|
| Protein GI | 119944207 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | [TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0542078 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA CTTTACTACT TACTTTCGCC ATTTACATGC TGGCAAGTTG CTCTTCAACA
GAACTCCTTC AGCAGATGGA TTCTAAGGAG ATCATAACGG CACCTGAATA CAAAATAGGT
GTAGGCGATC AGTTATCTAT TAATGTTTGG AAAAATCCAG AATTATCATT AAGCGTTACC
GTCCGCCCCG ATGGAAAAAT ATCAGTTCCA CTCGTTGGCG ATGCTCAAGC GGTCGGTCTT
TCTGCAGAGG CGCTAGCGGC AGAGCTTAAC AATAACCTCA AAAAGTTTAT CCGAAGTCCA
GAAGTCACCG TTATTGTAAG CTCTGCGATG AGTGCCGAGT TCCTATCTCG AGTACGTATC
ACAGGCGCTG TGCAAACACC TCTATCTATT CCCTATAGAG AAGGAATGAC AGTACTCGAT
TTAGTCCTAC AGGCTGGTGG GTTAAACCCT TTTTCTAATG GTGATAACGC AATTTTATAC
CGAAAAACTG ATAGCGGAAT TAAACGTTAT TCAATAAAAC TTAAGCGCAT AATAAAACAA
GGCGATATAT CGACTAATTA CGAGTTAAGG CCATCAGATA TCCTAATTGT CCCAGAGAGT
ATATTTTAA
|
|---|
| Protein sequence | MIKTLLLTFA IYMLASCSST ELLQQMDSKE IITAPEYKIG VGDQLSINVW KNPELSLSVT
VRPDGKISVP LVGDAQAVGL SAEALAAELN NNLKKFIRSP EVTVIVSSAM SAEFLSRVRI
TGAVQTPLSI PYREGMTVLD LVLQAGGLNP FSNGDNAILY RKTDSGIKRY SIKLKRIIKQ
GDISTNYELR PSDILIVPES IF
|
|---|
| |