| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0273 |
|---|
| Symbol | |
|---|
| ID | 4624524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 355400 |
|---|
| End bp | 358636 |
|---|
| Gene Length | 3237 bp |
|---|
| Protein Length | 1078 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639795470 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_941738 |
|---|
| Protein GI | 119944058 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTCA CTTCCTGGTT CAGGAATATC TCTATTCGCC GCAAACTTAT CGTCATCTCC
TTTTTCTCTA TTACAGCGGC TACGCTCCTG GCCATACTGT TATCGACACT TATGCAGTGG
TCTATGCTGC GGGAAGACCT AATCAAGAAT GTTTCCGCTC AGGCATCTAT TATCGCAGCA
AGTAGCGCGA ATGAGCTGGC CTCCAACGAC CGTGAGGCGG CACAGAAAAT AGTGGCGGTA
GTGGTAAATA TCAACAACAT TGAGTTTGCG GGAATACTTG ACAAAAAAGG GAATAATTTT
GCTCTCTATC TGCGGCCTGG AGTAACAATA GCAGCGCATT CACACCAGGG AGAGAAAGGT
GCAAGCCAGA TCCAAAATGC GGCCTACATC GAGATATCGC TTCCCGTCCT GTTGGACCAG
GAGCAGATTG GCCGGATCCA TGTGCGTTCC GATATGAATC CGGTCTACCA TAAACTCAAG
CTGAATATAC TCATTATCGT TGTCTCTGCT GCCGGCGCAT TTCTGCTCGT GGTACTGATG
CTGATGCGCC TGCTTCCGGT CATTACCAAA CCACTACAAG ACCTTGTTGG GCTGATGGAG
ATCGTTTCTA GAGACAACAA CTTCACCCTC AGGGCAAAGC TGAGTGGTAC CGTCGAGATA
GACATGTTGG CGAAAGGGTT CAACGCCATG CTCGCACAGC TGCAGATTTT CGATAATGCC
TTTATACAAA ACAGCCAACA CTTGGAAGAT GAAGTGGCTC AGGGCACTGA ACAGTTTCTG
GAGTCGGACA CACAGTTGGA AAAAGAGCTG GTTGAGCACA AGCTGGGTAA GCAGAAGCTT
AAAAATGTAA ACGAACAGCT ATCGGCTCTG CTCAATTCCC TGCCCATTGC TGTCTACCGC
AGCCGCGCAG AAGGCGACTT CGCCATGATC TATATGTCCC CAAATGTGCT CTCTTTTACT
GATTATGAGC CTAAAGATTT TATAGAACAA AGCGACTTAT GGCTCACCCG CCTCCATCCT
GACGATGCAG AAAAAATGAC TTCTGAGATG GAACTACTTT TTGAAAAAGA AGCACATGTT
TACGAGTATC GCTGGATGAG AGCTGACGGA ACTTACATCT GGATACAGGA TTCACTGAGG
ATTATACCGG AAGAAGATGG TATACCGCTC CATCTAGCGG GAATGTGGCA GGACATTACT
ACACGAAAGA AGGTGGAAGA GCAGCTGCGT AAAAGAGAGT TCGCCTACCG CACGCTCACG
CAGAATCTGC CGGGAATAGT CTATCGGCTA TTTGTCGATG AAGGTCACCG AATGGAGTTC
TATAATGAGA TGGTGCTTCA AACTACGGGC TACAGGGCAG ATGAACTGAC AGACAGTTCG
ATCAAACCGC TGATTCTGGA CGAGGACCGG CCGGCAGTCA TGGCCAAAGT GATGCTGGCG
GTAAAAGAGC AATGCCCATT CACTGTAGAG TACCGGTTGA AACATAAAAA CGGCACTATT
TGCTGGATGG TGGAGTACGG CATGCCGGTT TACGAAGATA GGAATGTACT GCTTTACATT
GATGGTCTGA TTTTTGATAT CACTGATCGA AAGGTGGCGG AAGAGGATAG TCATAAGCAG
CAGGAGCTCA CCAATCTAAT CATCGAGGCC ATTCCGATGC GCGTCTTTTG GAAAGACCAG
AATTTGCGTT TTCTGGGCTG CAATACCCTG TTTGCGAAAG ATGCCGGATA CATAAAACCT
GAGGAATTAA TCGGCAAAAA TGACTTTGAT ATGGCCTGGA AGGATCAGGC TGACCTTTAC
CACAGCGATG ACCGTCAGGT CGTAGATTCC GGTACTCCGA AACTTTCCTT CGATGAGCCG
CAGACCACAC CTGATGGCAG GCAGATCTGG CTGCGCACCT CCAAAGTGCC CTTGCATAAT
GATGCACATC AGAGCATCGG CATTCTGGGT ATTTACGAAA TGATTACCGA GTATAAACAG
TTGGAGCTAA AGCTGCGCGA AAGCGAGGAG CGTTTCCGTA ATGTTACCGA ACTGACATCA
GATTGGGTCT GGCAGATCGA TCAGAATGGC ATCTATGTCT ATTCTGGCGG CAAGAGCCGC
GATCTCCTTG GTTATGAGCC TGAAGAAGTT TATGGCAATA CGCTTTTCGA TTTTATGTCG
CCAGAAGAGG GCGCACGGGT CGGTGCAATC TTCAAGAAGT TAACCTGCGA ACAAAAGCCA
TTTTCCTTTA TGGAGAACAC CATACTTCAC AAGGATGGCC ACCAAGTTAT TCTAGAGACC
AGCGGCGTGC CCTTGTTCAG CGATGATGGT ATTTTTCAGG GCTTTTTCGG AACGGAACAC
GACATTACCG AGCGTAAACA GGCTAAGGAA GCGCTGGAGG AGTCCGAGTA CAAGTTCAGA
ACCATACTCG ATGTTGCTGC TGACGGTGTC TGTCTGGTCG ATAAACAGAC CCGCAAATTC
ATTCAGGGGA ACAATGCGAT CTGCAAAATG CTTGGCTACC GCGATGATGA GCTCTACGAA
CTTGGCATCG AAGACATCCA CCCGGCTGAA GCCCTTGCTG AAGTATTCCT GCAATTTAAT
AAAAAACGCC AAGGAGAAAT TATTGTGGTA CCTAATATCC CGGTGAAGCG TAAGAATGGC
TCAATATTTT TGGCTGATAT AAGCAGCGCG GCCATCATCC TAGACGGACG GACCATTATG
GTTGGTTTTT TCCATGATGT GACTGAACGT AAGAAAGTGG AAGAGGAGAT TAAACTTCTG
GCGACAACCG ACAGCCTCAC CGGGATCGCC AACCGCAGAG CGTTCAGTAC GCATCTTGCG
AGTGAACTCG AACGGAGCAA TCGCTATGGT ACGCCACTGT CGCTGGTGAT GTTCGATATT
GATTATTTCA AAAAAGTGAA CGACAACTTC GGACACGATG CGGGCGACGA TGTTTTGCAG
GCCCTCTCAG AATTAGTAAA GAGAAATATT CGTGCGGTTG ATATTGTTGC GCGCTGGGGG
GGTGAAGAGT TTATGCTCCT GATGCCGGAA TCGGATATCT CAGCCGCAAC AGCGGCGATC
GAGAAACTGC GCAGGGAGAT TTCCGACTTC CCTTTCGGCC AAGTCGGCAG CCTGACGGTC
AGTTTTGGTA TTACCGTTTT TGTGCTTAAT GAGGATTCTA AAGTATTTTT GAAAAGAGTG
GATGATGCGC TTTATCAGGC GAAGGAGAAA GGGCGTAACC GCGTCGAAAT CCTCTAG
|
|---|
| Protein sequence | MSLTSWFRNI SIRRKLIVIS FFSITAATLL AILLSTLMQW SMLREDLIKN VSAQASIIAA
SSANELASND REAAQKIVAV VVNINNIEFA GILDKKGNNF ALYLRPGVTI AAHSHQGEKG
ASQIQNAAYI EISLPVLLDQ EQIGRIHVRS DMNPVYHKLK LNILIIVVSA AGAFLLVVLM
LMRLLPVITK PLQDLVGLME IVSRDNNFTL RAKLSGTVEI DMLAKGFNAM LAQLQIFDNA
FIQNSQHLED EVAQGTEQFL ESDTQLEKEL VEHKLGKQKL KNVNEQLSAL LNSLPIAVYR
SRAEGDFAMI YMSPNVLSFT DYEPKDFIEQ SDLWLTRLHP DDAEKMTSEM ELLFEKEAHV
YEYRWMRADG TYIWIQDSLR IIPEEDGIPL HLAGMWQDIT TRKKVEEQLR KREFAYRTLT
QNLPGIVYRL FVDEGHRMEF YNEMVLQTTG YRADELTDSS IKPLILDEDR PAVMAKVMLA
VKEQCPFTVE YRLKHKNGTI CWMVEYGMPV YEDRNVLLYI DGLIFDITDR KVAEEDSHKQ
QELTNLIIEA IPMRVFWKDQ NLRFLGCNTL FAKDAGYIKP EELIGKNDFD MAWKDQADLY
HSDDRQVVDS GTPKLSFDEP QTTPDGRQIW LRTSKVPLHN DAHQSIGILG IYEMITEYKQ
LELKLRESEE RFRNVTELTS DWVWQIDQNG IYVYSGGKSR DLLGYEPEEV YGNTLFDFMS
PEEGARVGAI FKKLTCEQKP FSFMENTILH KDGHQVILET SGVPLFSDDG IFQGFFGTEH
DITERKQAKE ALEESEYKFR TILDVAADGV CLVDKQTRKF IQGNNAICKM LGYRDDELYE
LGIEDIHPAE ALAEVFLQFN KKRQGEIIVV PNIPVKRKNG SIFLADISSA AIILDGRTIM
VGFFHDVTER KKVEEEIKLL ATTDSLTGIA NRRAFSTHLA SELERSNRYG TPLSLVMFDI
DYFKKVNDNF GHDAGDDVLQ ALSELVKRNI RAVDIVARWG GEEFMLLMPE SDISAATAAI
EKLRREISDF PFGQVGSLTV SFGITVFVLN EDSKVFLKRV DDALYQAKEK GRNRVEIL
|
|---|
| |