Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_0110 |
Symbol | |
ID | 4626179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 141500 |
End bp | 142909 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 639795306 |
Product | MATE efflux family protein |
Protein accession | YP_941583 |
Protein GI | 119943903 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.372068 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTTATG CAAAGCGCTC ACTGTGTTTA CAATTGAGTA TTTTTATCAT GATAAAATCC CCCCTTTTCA ATTTAACTAT CCACCAGAAA ATATTCGCAA TTGCATTTCC GATGATGATT TCAAATATTA GCGTGCCATT ACTTGGCCTT GTTGATACGG CCGTGATTGG GCATATGCCG GAATCATACT ACTTAGCGGG AGTCGCAGTA GGCTCGATGA TTGTGACGCT TATTTTCTGG ATGCTGGGTT TTTTAAGAAT GTCGACCACC GGATTAGTCG CACAGGCTTA TGGAGCGGGT GATCATCAGC AAATTATTCG CTTGTTGTTA CAAGCTATTC TAGTCGCTTT GTTGTTAGCT ATTGCCATTT TACTCTTACA AAAACCTTTG ATTATATTGG CCTTAAAATT TATTGAGGGT AGTGAGCAAG TTCTTTTTTA TGCACAGTTA TATTTTAATA TCCGTATTTG GAGCGCGCCA GCAGCTTTGA TTAATATGGC GTTATTAGGT TGGTTACTGG GTATGCAAAA TGCCAAAGTA CCTATGTTTT TACTGATTAT TAGCAATGCC ATCAATATTG GTTTAGACGT ATTATTTGTG GTGTTTTTGG ATTGGGGAGT TGCAGGAGTG GCCTGGGCAT CTCTATTCGC TGATTATATT TCTTTATTGT GCGGTTTATT ACTTGTTAAA AATCACATTA AGCCTTTTTA TAAACAGGGA GATTTACTTA AATTAAGTAA ACAACTTAGC GATTTAAATT CTCTTAAAAA ATTTATTTTA TTGAACCGTG ATATATTTAT TCGCACTTTA TGTATACAAG TCACCTTTGC GTTTATGACG ATTCAGGGGG TTAAATTGGG AGATGCTGTT GTTTCTGCAA ATTTAGTGTT GATGCATTTT CTATTACTTA TCTCTTTTTC TATGGATGGT CTTGCTTATG CAGCCGAAGC ACTTGTCGGG AAAAGTATCG GTACACGTTG TTTAATAAAA TTAAAAGAAA GTGTTTATGT CACTTTATTT TGGTCGGTTA TTTTTAGCTT ATTGCAGCTC CTGTTATTTT ACGTTTATGG GCAGTGGATT ATTGCGCAGA TAACATCGAT TGAAAGTGTG CAAAAAGAGG CGCTCAGCTA TTTGCCCTGG TTAGTTATTA TTCCGATAAC ATCAGTATTA GGTTTTATTT TTGATGGGAT TTTTATCGGT ATGACACGTG CCAAGGAGAT GCGTAATAGT CTTATTTTTT CTCTTTTGCT GGTCTATTTC CCCGTTTGGT TTCTATTTTC AGAACAGGGT AACCACGCCT TGTGGATAGC AATGAATGCT TTTATGCTTG CCCGCGGATT AAGCCTTGCA TGGATTTATA GGCAACTTAG TAAAAAAGAC CAACTAATAC CAAAAGAACT AAAAAGGTGA
|
Protein sequence | MSYAKRSLCL QLSIFIMIKS PLFNLTIHQK IFAIAFPMMI SNISVPLLGL VDTAVIGHMP ESYYLAGVAV GSMIVTLIFW MLGFLRMSTT GLVAQAYGAG DHQQIIRLLL QAILVALLLA IAILLLQKPL IILALKFIEG SEQVLFYAQL YFNIRIWSAP AALINMALLG WLLGMQNAKV PMFLLIISNA INIGLDVLFV VFLDWGVAGV AWASLFADYI SLLCGLLLVK NHIKPFYKQG DLLKLSKQLS DLNSLKKFIL LNRDIFIRTL CIQVTFAFMT IQGVKLGDAV VSANLVLMHF LLLISFSMDG LAYAAEALVG KSIGTRCLIK LKESVYVTLF WSVIFSLLQL LLFYVYGQWI IAQITSIESV QKEALSYLPW LVIIPITSVL GFIFDGIFIG MTRAKEMRNS LIFSLLLVYF PVWFLFSEQG NHALWIAMNA FMLARGLSLA WIYRQLSKKD QLIPKELKR
|
| |