| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0024 |
|---|
| Symbol | |
|---|
| ID | 4624954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 34893 |
|---|
| End bp | 37742 |
|---|
| Gene Length | 2850 bp |
|---|
| Protein Length | 949 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639795217 |
|---|
| Product | pentapeptide repeat-containing protein |
|---|
| Protein accession | YP_941498 |
|---|
| Protein GI | 119943818 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATATAA TTAAACCCCT GCAACTTGCC GTACTGCATA AATCCTTTTC TTATTTAGAA
AAGGATATTT TTGCGGTGTC CATTCCTATT GCTTTTTCCT TAACGGACGG CGAAATTTTA
CTTGAGCAAA AACTATGGGA AAGCGTAGGT GAACAAATCG GCAATAATAT TTTTGATGCC
GCCATGCCCA AAGCCTGTGC TGAAGTACTG GTTGCCGGTG ATTTTATTGC GCCAAATAAT
AAAGCCGTCG CTGCCGGCTT GGTGCATTTG CAAGTGTCTC GTCAAGACCA GCGTGGCCAA
TGGCAAGACT TAGTGGATAA AGAGCTGCTG GTTTTTGGCG ATCGAAACTG GTACAAACAA
TTAGGCGCGG GTCTTGCCAG CAGCTCCGCT GAGCTTATAA CTACTATGAC CATAAGCTAT
CAAAATGCTT ATGGTGGTGA AGGTTATCAA TTAAACCCCG AAGGAAAAGG CTTTAAACCG
GTACAGACAG ATACGGGTGA AAAGCAATTT TTACCCAACA TTGAATATAA AAATCAATTG
TTAACCTCAT CGTCACAACA AGTGCCGCCT GCCAGTTTTG GCCGGGTTGA TATGATGTGG
CCGCAACGTT TATCCCTTGC CGGCACCTAC GATCAGGCTT ATCTTGATAA CCAAATGCCG
GGCCTCGCGA ATGATATCGA TTGGTTATAT TTTAACGATG CCGCTAAAGA TCAGTGGCTT
GATGGTTTTT TTCAAGGTGA CGAGCAGTAT TTTATTAGCA ATATGCATGC TGAGCATGCA
GTGCTTAAAG GGCAATTACC GCCCATTTAC GGCCGTGCCT TTGTAAATCA AAACGTGCCG
CTAAAAGATA ATAACCAGCA AATGACCGGG GAATACCAAA ATGAGTTTAA AGAAATAAAA
ACTAAATTGG ACACGCTGTG GTTATTTCCT AATGCCAATA TGGGGGTGAT GATCTATCGC
GGTACTATTA AAGGTTATAG CGATGACGGC TGTGATATTA CGGCGTTATT ATTAGCTTGT
GAAAACCGCA ATGATACGCC TCGTCATTTA CAGCATTATC AGGATCAACT CACTAAAAGG
TTAGATCCTG ATCACGGTTA TAAATATATG CTGTTTTCAT CCCCATTGAT TGCCGAGGGC
ATGCGTTGTG GTTTTAAACA ACTGCAGGAT GATTTTGATT TCCCATTAGA AATGCTTGGT
AAAGCCAATA TGGATGAATT TGCTGATACT AAAAAAGCCG AGGCTATGTT GCAAGTCGAC
GATGCCAAGC TGCAAATTAT TGAGCAATGT AAGGCCGCAG GCGTGGACCC AACACCCTAT
TTAGATAAAA TTAACAACCC TGAAAAAGCC CCTGAGCAGT TAAAAATAGA AGCCTTAATG
GAAAAAATGG CACCGGGTAT AGTGACCGAT CCGGAAAATA TCGATATTTT TAATATTGAT
TTATCGGTGA TGGATGAAAT TAAAGCTTAT ACCGATGAAA TGGCCGCGCA AAAAACAGCC
GAAGCAAAAG CGCAAATCAA AGTGGAAGTC GAAAAATTAA AAAGTATGCC CGATGTCCAT
TTATTTGCTG ATGCAATTGC AAAAATGGAA AATGCGATAA ATGAAATAGA TTTACCTCCA
ATGTGGCCAC GTCCTGATAT AAAAGGGCAA TTGGTTGAAG TCAAAAAGCA AGTGGCAGAG
ACAGAAAAAA AAATAGCGGA TCTTAGAGCG CAAGGCGTGT CTGAGGAACA GTTACCAAAA
ATAGATATTA ATATTGAAAA GATAGAAAAA CAATTGTTAG ATGCTGAAGT TAAGTTAAAA
GAAACCTATG CGATGGGCGC GCACTTAATG CCAACAAGCC GTTCACCGCA CCCCGGGCAG
GAAGCGCAAA TCAAAGCGGA TTTTTTACAA AAGTGGCGCA CCGGGCAAGC GCTGACCAAT
GGCGATTATG CTTGTATTGA TTTAAGCGGT GAAAACTTAG TGGGCATTGA TTTAAGCGGC
TGTTATCTTG AGGGCGTGAA CTTTAGCCAT TGTGATTTAA GCAATGCTAA CTTAGAAAAA
TCCATATTGG CAGGGGCGAA TTTAAGCAAT GCGAAGCTGA TTAATGCCAA TTGCCAGGGG
GCCAATATTG GCGCGGCTAA TTTAAGCGAT GCTGATTTTA GCGAAGCTAA CTTAAGCAAA
GCACAACTGG GCGGATCAAA TTTCACCCGG ACTCAACTGC TGCGCTGTGA AATGCCTGAA
ATTAACTTTT TAGATACCAC CTTTGAACAG ACCGTTTTTA ATGGTGCGGT GCTTAAACAA
TGTAATTTTA TTAACCCCAT CTTTAATAAC TGTGAGTTTA TCGGCACTGA TTTAACTCAA
GTTAATATGG TAAAGCCGGT ATTAGTGCAG GCCAATTTTA GCCAGGCGAC CCTTGATGGC
GCAAATTTTG TTGAAGCGCA AGCCAGTGAA AGTGATTTTA GCCAGGCTCA AATGATCAAT
AGCCGTTTTG TGGGTGGCTG TATATTAAAT AACAGTAATT TTAGTCAGGT GAACTTAAGC
AAGTCATGTT TACGTGAAAA CCAGTTAAAC CACTGTGACT TCTCTCATGC ACAATTAGCG
GAAGCCGATT TTAGTGGCGC AGAGCTGGCT GATAGTCAGT TTGTAGGGGC CAAAGCTCAC
CGGACACAAT TTATGAAATC ACAATGTCAA AATGCTGATA TGCGCGAGCT GAATTTAATG
GAAGGTTCGT TATATAAAGC CTATTTAGTG GGAGTGACGT TTGATCGAGC CAACTTATAC
TGCGTTAATT TTATTGATAG TACATTAGGT AATAATAGTT ATAAAGACGC TAATCTTGAT
CAAACTATTT TAAAAAATTG GCGGCCATAA
|
|---|
| Protein sequence | MNIIKPLQLA VLHKSFSYLE KDIFAVSIPI AFSLTDGEIL LEQKLWESVG EQIGNNIFDA
AMPKACAEVL VAGDFIAPNN KAVAAGLVHL QVSRQDQRGQ WQDLVDKELL VFGDRNWYKQ
LGAGLASSSA ELITTMTISY QNAYGGEGYQ LNPEGKGFKP VQTDTGEKQF LPNIEYKNQL
LTSSSQQVPP ASFGRVDMMW PQRLSLAGTY DQAYLDNQMP GLANDIDWLY FNDAAKDQWL
DGFFQGDEQY FISNMHAEHA VLKGQLPPIY GRAFVNQNVP LKDNNQQMTG EYQNEFKEIK
TKLDTLWLFP NANMGVMIYR GTIKGYSDDG CDITALLLAC ENRNDTPRHL QHYQDQLTKR
LDPDHGYKYM LFSSPLIAEG MRCGFKQLQD DFDFPLEMLG KANMDEFADT KKAEAMLQVD
DAKLQIIEQC KAAGVDPTPY LDKINNPEKA PEQLKIEALM EKMAPGIVTD PENIDIFNID
LSVMDEIKAY TDEMAAQKTA EAKAQIKVEV EKLKSMPDVH LFADAIAKME NAINEIDLPP
MWPRPDIKGQ LVEVKKQVAE TEKKIADLRA QGVSEEQLPK IDINIEKIEK QLLDAEVKLK
ETYAMGAHLM PTSRSPHPGQ EAQIKADFLQ KWRTGQALTN GDYACIDLSG ENLVGIDLSG
CYLEGVNFSH CDLSNANLEK SILAGANLSN AKLINANCQG ANIGAANLSD ADFSEANLSK
AQLGGSNFTR TQLLRCEMPE INFLDTTFEQ TVFNGAVLKQ CNFINPIFNN CEFIGTDLTQ
VNMVKPVLVQ ANFSQATLDG ANFVEAQASE SDFSQAQMIN SRFVGGCILN NSNFSQVNLS
KSCLRENQLN HCDFSHAQLA EADFSGAELA DSQFVGAKAH RTQFMKSQCQ NADMRELNLM
EGSLYKAYLV GVTFDRANLY CVNFIDSTLG NNSYKDANLD QTILKNWRP
|
|---|
| |