| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1433 |
|---|
| Symbol | |
|---|
| ID | 4617317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 1300196 |
|---|
| End bp | 1300816 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639784517 |
|---|
| Product | nuclease |
|---|
| Protein accession | YP_930933 |
|---|
| Protein GI | 119872926 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.218416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.0340527 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCAGCT TGTGCCTGTG GCATATCTCG AGCTCCCAAG CGGCTCTCTG TTGGAAATCT
ACAGTTCACG TGTGTTTGGG CGGGGAGATC TCAACCTCTC GTCTCACATC ACCTCTTTTT
TCAGACCTGG CGATCAATGC GACTGTCGTC GTTGTTGAGA TGCCAGACGT AGATGCGCAA
AGAGTTGCCG TGTGGAGAGC AATTGATGGC GATACTGTGG AAACGTCCGT GGGCAGAGTT
AGGCTTGTGG GTTACGACGC TTGGGAGTGG GACGAGCCGC ACGGCCCAGA GGCCAGATAT
TTCCTCATCG GTTTGTGCGG TGGCACAGAT TACTTAGACG TAGACGACCT AGAGCCGAGA
GATAGATATG GGCGTATACT TGGCTACCTC TGGTGTGGCC GCGTCTTTGA GGTCGGCGGC
ATCTACTACA CGGCGTATGC CTCTGTACAG AAGGCTTTTC TACTCGTAAG ACCTGACCTC
GTGAAGAGAC CGCTCTACAT CCCGCCAGAT GAGCACCCAT ATTGGCGCTG GCTCAAGCAC
TTTACCGTCG CCTTTGATCG AGTTGATAGA GAAGACAAAA CAACTCGTCC ACCCCGAGCC
ATCAAACTTT TAACCCCCTA A
|
|---|
| Protein sequence | MFSLCLWHIS SSQAALCWKS TVHVCLGGEI STSRLTSPLF SDLAINATVV VVEMPDVDAQ
RVAVWRAIDG DTVETSVGRV RLVGYDAWEW DEPHGPEARY FLIGLCGGTD YLDVDDLEPR
DRYGRILGYL WCGRVFEVGG IYYTAYASVQ KAFLLVRPDL VKRPLYIPPD EHPYWRWLKH
FTVAFDRVDR EDKTTRPPRA IKLLTP
|
|---|
| |