| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1431 |
|---|
| Symbol | |
|---|
| ID | 4617601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 1297935 |
|---|
| End bp | 1298930 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 639784515 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_930931 |
|---|
| Protein GI | 119872924 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.23778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.0751617 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGAAAAA ATAAAATAGT CGTACTAGCT CTTTCTAAAC TTATACTAAT CGGCATAGTA
GCGGTAAATA TCTACTACGC CGCCAAGGTA CTACTCCCTC TCTTTGGGAT AGGACTGAGC
CAAGAGCAGT TAGATCTCCT AAAGTCTGTT ATAATTCTCT TCGCAGGAGC CACAGGAGTT
AACGTAGCCG GCAATGCGGT AATTCTATAC TTTAGAGAAA CTCTGAGAGA AAAGGCGTTT
GCAATTGGTA ATGTTTTAAA AATCGTCGGC ATAATAGCAG TAGTCCTTTA CGTAGCATCT
TTCTCCAAGC TGGGCGCAGA GTTGGCTCTA CTCGGCGGCA CAGTCACTGG TTTAGTTCTC
GGCTTAGCGT TACAGCCGGT CTTGGGAAAC CTCTTTGCGG GTATTATCAT ATTAACAACC
CGGTTTGTAG AGGTAGGAGA TACAGTGAGG ATAGCTGCAT CACAAATACC ATATTACATT
GCTTTTCTCC CGTCCTATAA GTATTTCTCT CCTGACTACG TGGTGCCCGG CTTTAAAGGC
AGAGTGGCAG AAATAGGCTT GATGTATACC ACATTGCTCC TAGACACAGG ATATGAGCTA
CGGGTGCCAA ATATGATTCT CCTAAGCTCC GGCATTGTGG ACTACACGCC GAAGTGGAGC
GAGCGGCAGG TTGTATTTGT GAGAGTTGAG CTACCTCTCT CGGTTATTGA TATAGATAAG
CTAGAGGAGG AGGTGAGAGA GGTTTTAAGA GGTTTCAATA TAGTTGCGAT AGATTTTACA
GAACAAAGCG ATAAAGACTA CGTCATTATT AGAGTAAAGC TCGAGATACC CCAAGGCGAA
AACTGGAGAA ACGTCAAAAG CGAGGCTCTT AAACGTCTTT TAAAATACCG CAATGAGAAA
ATTACTGCAA ACCTTGACAA ATATCTATGT CTAACCAGGG GGATTCTCTG TGATAAGTAC
ATAAATAAAT TGGCTACCGA CGTCTCGTCT TCTTAA
|
|---|
| Protein sequence | MRKNKIVVLA LSKLILIGIV AVNIYYAAKV LLPLFGIGLS QEQLDLLKSV IILFAGATGV
NVAGNAVILY FRETLREKAF AIGNVLKIVG IIAVVLYVAS FSKLGAELAL LGGTVTGLVL
GLALQPVLGN LFAGIIILTT RFVEVGDTVR IAASQIPYYI AFLPSYKYFS PDYVVPGFKG
RVAEIGLMYT TLLLDTGYEL RVPNMILLSS GIVDYTPKWS ERQVVFVRVE LPLSVIDIDK
LEEEVREVLR GFNIVAIDFT EQSDKDYVII RVKLEIPQGE NWRNVKSEAL KRLLKYRNEK
ITANLDKYLC LTRGILCDKY INKLATDVSS S
|
|---|
| |