| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3560 |
|---|
| Symbol | |
|---|
| ID | 4605807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4195668 |
|---|
| End bp | 4196237 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782981 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_929432 |
|---|
| Protein GI | 119776692 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1704] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGAT TATTAATAGG TCTGGTTTTA GTATTGATAG TGGCCTACCT CTGGTATGTA
AGCCTGATCA AGAAACGCAA TACTGCCCGA GAGGCATTGT CAGGTATCGA TGTGCAGCTT
AAAAAGCGTG CCGATCTGGT TCCCAATATT CTGACCATAG CGCAGAAATT TATGGACCAC
GAAAAGTCAC TGCTGACAGA GATCACGGCG CTGCGCACCC AGCTCACCGC CGGTTACGAC
AAAAATGACG CCGATGCTGT ACGCCAGCAC CTGGCGCAGG CCGATGCCCT AAACAGCAAG
ATGGGTCAGC TGATGGTGAC GGTTGAAAAC TACCCTGAAC TCAAAAGCGA CCAGACCATG
GTGCAGGCCA TGCAAACCTA TAACGAGGTT GAAGCGCACA TCAGTGCCGC CCGCCGTTTT
TACAACTCGG CCGTGTCTGA ACTGAACACC GCAGTGGAAA TTTTCCCCGG CTCACTGATT
GCCAACATGG CATCGGTTAA AGCCATGCCG TTTTTTGAAG CTCAGGAAGC CGACAGGGCA
CCGGTAAACG CCAGCGACTA CCTGAAGTAA
|
|---|
| Protein sequence | MEGLLIGLVL VLIVAYLWYV SLIKKRNTAR EALSGIDVQL KKRADLVPNI LTIAQKFMDH
EKSLLTEITA LRTQLTAGYD KNDADAVRQH LAQADALNSK MGQLMVTVEN YPELKSDQTM
VQAMQTYNEV EAHISAARRF YNSAVSELNT AVEIFPGSLI ANMASVKAMP FFEAQEADRA
PVNASDYLK
|
|---|
| |