| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3308 |
|---|
| Symbol | |
|---|
| ID | 4605555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3937090 |
|---|
| End bp | 3937857 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639782728 |
|---|
| Product | AraC-type DNA-binding domain-containing protein |
|---|
| Protein accession | YP_929180 |
|---|
| Protein GI | 119776440 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.598645 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATTT TGCAGCTGGG CATGGCCTTC GATGCCGACG CCTTCTCGGC CAGCGTCATC
GGTATCGCGG CCGATGTAGG CTCACACGAC TCGGGCGTTC ATCGTCATGG CAAGGGGCAA
CTGCTTTATG CGCCCCAGGG CTGCATCACT TTTGCATGGG AAGATGCTAT CGGTATCCTG
CCGCCCACCA AGGCGGTGTG GATCCCGCCT CACACCCCCC ATAGGGCGGT GATGACCAAT
GTAGTCGCCT ACCGTTCACT TTATTTCGAC TGCAGTCGCA TCGTGGCCCC AGCAAGCGTC
ACCATGGTGG ACGTCAACCC TCTGCTGAAG GCGCTGATAG ATAAGATGGC GTTCTGGCCA
TGGGATACTC CCGAGGCCAG TATGACCCAC AGCTGCGCCC TGTTTTGGGA AGAATTTTAT
GCCGCCAGGT GCCATTCGTT TCGGCTGACC ATTCCGGTAG ATCGCCGTTT TCATGGCTTT
CGCCAGCAGC TGTTCAGGCC CGAATTCCTC CCCCCAGATA TCGATTCTTT GGCAGCGACG
ATTGGTGCCA GCACCAAGAC GGTTACCCGT TTGTTCAAAA GAGATACAGG CATGTCGTAT
CAGGAATGGC GCCAGCAGTG GCGCCTGCTC AAGGCCATCG AATTATTGTC CGGCGCCCTG
CCGGTGAGCG AAGTTGGTTT TAGGTTGGGT TTCTCATCCG ACAGCGCTTT TATTGCATTT
TTCAGGAAAC AAACCGGAAA AACACCAAGA CATTTCATGC AGGGATAA
|
|---|
| Protein sequence | MAILQLGMAF DADAFSASVI GIAADVGSHD SGVHRHGKGQ LLYAPQGCIT FAWEDAIGIL
PPTKAVWIPP HTPHRAVMTN VVAYRSLYFD CSRIVAPASV TMVDVNPLLK ALIDKMAFWP
WDTPEASMTH SCALFWEEFY AARCHSFRLT IPVDRRFHGF RQQLFRPEFL PPDIDSLAAT
IGASTKTVTR LFKRDTGMSY QEWRQQWRLL KAIELLSGAL PVSEVGFRLG FSSDSAFIAF
FRKQTGKTPR HFMQG
|
|---|
| |