| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3279 |
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| Symbol | |
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| ID | 4605526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3894717 |
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| End bp | 3896573 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639782699 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_929151 |
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| Protein GI | 119776411 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAAT TACGTTCTGC CACCAGTACC GAAGGCCGCA ATATGGCGGG TGCCCGCGCC
CTGTGGCGTG CCACCGGCGT GAAAGATACC GACTTCGGCA AGCCCATCAT TGCCATTGCC
AACTCCTTTA CCCAGTTTGT GCCAGGGCAC GTGCACTTAA AAGACATGGG CTCTCTCGTG
GCTTCGGCCA TCGAAGAGGC GGGCGGTATC GCCAAAGAAT TCAACACCAT CGCCGTGGAT
GACGGCATTG CCATGGGTCA CGGCGGCATG CTGTATTCGC TACCATCCCG GGAGCTCATT
GCCGACAGTG TGGAGTACAT GGTAAATGCC CACTGCGCCG ATGCGTTGGT GTGCATCAGC
AACTGCGACA AAATCACCCC CGGCATGTTG ATGGCTGCGC TGCGCCTTAA CATCCCCGTG
GTGTTTGTTT CCGGTGGCCC GATGGAAGCG GGTAAAACCA AGCTGTCTGA CAAGCTCATT
AAGCTCGATT TGGTGGACGC CATGGTGGCC GCGGCGGACG ACCGTATCAG CGATGCCGAC
AGCGAGAAAA TCGAGCGCAG TGCCTGCCCG ACCTGCGGCA GCTGCTCTGG CATGTTTACC
GCCAACTCCA TGAACTGCCT CACCGAAGCG CTGGGTTTGT CACTGCCGGG CAATGGCTCC
ATGCTGGCGA CCCATGCCGA TCGCCGTGAG CTGTTCCTCG AGGCCGGTCG CCGGGTAATG
AAACTTGCCA AGCGTTACTA CGGTGACGAC GATGCCTCAG TTTTGCCCCG CTCCATTGCC
TCGTTCAAGG CCTTTGAAAA CGCCATGGCG CTGGATGTGG CCATGGGCGG CTCGTCCAAT
ACCGTATTGC ACCTGCTGGC GGCGGCCCAG GAAGCCGAGG TGGATTTCAC CATGGATGAT
ATCGACCGCA TCAGCCGCAA GGTGCCGCAC CTGTGCAAGG TGGCGCCCTC TACGCCCAAA
TACCATATGG AAGATGTGCA CCGCGCAGGT GGTGTAATGG CCATTTTGGG TGAGCTGGAC
CGCGCCGGGC TTTTGCACAC AGATGTAAAC CATGTGGCTT CTGAAGATGG CACCTTGAAA
TCAGTGCTGG AGCGCTTCGA TGTGGTGCTG ACCAAAGATG AAAAAGTGCA CGAGTTTTTC
CGAGCAGGTC CTGCGGGCAT CCCTACGACC CGCGCCTTCA GCCAATCCTG CCGCTGGGAT
ACCCTGGATG ATGACCGCCG TGAAGGCTGT ATCCGCAGCC GTGAGTTTGC CTTCAGTCAG
GAAGGTGGCC TGGCCGTGCT CTCCGGCAAC CTCGCCGAAA ACGGCTGTAT CGTCAAAACT
GCTGGCGTGG ATGAGTCCAA CCTCAAATTC AGCGGCGTGG CACGGGTATA TGAGAGTCAG
GAAGATGCCG TAGCCGGAAT CCTTGGCGGC GAAGTGGTGG CCGGTGACGT GGTGGTCATT
CGTTTTGAGG GCCCCAAAGG CGGCCCCGGT ATGCAGGAAA TGCTCTACCC AACCAGTTAC
TTAAAGTCAC GGGGCCTTGG CACCCAGTGC GCGCTCATTA CCGATGGCCG CTTCTCCGGC
GGTACCTCGG GGCTGTCCAT CGGTCACGTC TCGCCCGAGG CGGCCTCAGG CGGCACCATA
GGCCTGATTG AAAATGGCGA TCGTATCGAT ATCGATATCC CCGGCCGCAG CATCAAGCTG
CTTGTGAGTG ACGCCGAGCT CGAAAGCCGC CGCGCCGCCA TGAATGCCAA GGGACCGCTG
GCCTGGAAAC CGCTGTCACG GGTTCGCCCT GTGTCGATGG CGCTGAAGGC GTATGCCATG
CTCGCCACCA GTGCCGATAA GGGCGCGGTG CGTGATGTCT CCAAACTGGA GGGCTGA
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| Protein sequence | MAKLRSATST EGRNMAGARA LWRATGVKDT DFGKPIIAIA NSFTQFVPGH VHLKDMGSLV
ASAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDKLI KLDLVDAMVA AADDRISDAD
SEKIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHADRRE LFLEAGRRVM
KLAKRYYGDD DASVLPRSIA SFKAFENAMA LDVAMGGSSN TVLHLLAAAQ EAEVDFTMDD
IDRISRKVPH LCKVAPSTPK YHMEDVHRAG GVMAILGELD RAGLLHTDVN HVASEDGTLK
SVLERFDVVL TKDEKVHEFF RAGPAGIPTT RAFSQSCRWD TLDDDRREGC IRSREFAFSQ
EGGLAVLSGN LAENGCIVKT AGVDESNLKF SGVARVYESQ EDAVAGILGG EVVAGDVVVI
RFEGPKGGPG MQEMLYPTSY LKSRGLGTQC ALITDGRFSG GTSGLSIGHV SPEAASGGTI
GLIENGDRID IDIPGRSIKL LVSDAELESR RAAMNAKGPL AWKPLSRVRP VSMALKAYAM
LATSADKGAV RDVSKLEG
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