| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3108 |
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| Symbol | |
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| ID | 4605355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3679771 |
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| End bp | 3681912 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782524 |
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| Product | von Willebrand factor type A (vWA) domain-containing protein |
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| Protein accession | YP_928980 |
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| Protein GI | 119776240 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1240] Mg-chelatase subunit ChlD |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0355813 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCATC CATTAACGCA AATGTTTCGT ACCATGTGTC TGGGATCTGC CCTTGTTGGG
CTGATTTGGA TTAGCCCTGT TGCCGATGCG GCCGGGCTGT TGAAACCCGT CGGCAGTCAA
TACCGAGATA TGCAAATTCA ATCCCATCAT GTGGAGGTGG TTATCCAGGA TGGCCATGCC
ACCACCGCCA TCGAACAAAC TTTTTATAAC CCCAACCCCG ATACACTGGA GGCGCTCTAC
TCCTTCCCGG TGCCACAGCA AGCCGTGGTC GGCGAGTTTA TCTATTGGAT TAATGATGTG
CCTGTGGTTG CCGAAGCTGT GCCCCGGCAA AAGGCCCGCG AGATTTACGA GGACCAGAAA
GCACAGGGCA ATGCCACAGC TCTGACTGAA AAGGACGACT ACAAGCGCTT TGATATGCGG
GTATTTCCGG TGCAGCCGCA ACAGTCGGTA AAGGTTCGGC TGGTGTATAT GCAGGATGCC
TTGCTGGACC ACGGCGTTGG CCGTTATCTC TACCCTTTGG AGGAGGGCGG TGTGGATGAG
GCCCGGGACA GCTTTTGGCA GCGCAATGCC GTGGTCGAAC AGGACTTCTC CTTTAATGTC
ACCCTGCGCT CGGCTTATCC GGTGGACGGT GTGAGGTTGC CGTCCCATCC GGAGGCTGAG
ATACATCAGG AGATGCAGGC AGGCGCTGCT CTGTGGCGCG CCAGCCTGAC GAGTCAGCCT
GAGAGCCTCC ATACTGGCGC CATTGAAAGC GTGAGTGCTA ATGAAGATAC CAGTCAGGGT
GCGGAAAGTG GTGCTGCAGG GGAAGGGAAG GCTTCGCATC AGCCCAGGGC CATGGGGCTC
GATAAGGACA TCGTTTTTTA CTGGCGTCTG CAGGAAGGTT TGCCGGGCCG GGTGGACATG
GTGACCTATC GCGATCCCAA AGTCTCGACC AAGGGCACGG TAAAGCTGAC CTTTACACCC
GGTGATGATT TAGGGCCCGT GACTCAGGGC CGGGACTGGG TGTTTGTGCT GGATAAGTCC
GGCTCCATGA ATGGCAAGTA TGCCACCCTG GTGGAAGGTG TGCGCCAGGG GCTGGGTAAA
CTGCCAGCGC AGGACAGATT CAGGATCATT CTGTTCGATG AAAGCACTCA GGAATTCAGC
AAGGGCTTTG TGCCGGTTGA CAGCAACAAC ATCAACCAAG CGCTGGCCTG GGTTGAGGGC
ATCAGCCCCG GAAATGGCAC CGATCTGTAT CAGGGGCTGA AGCGTGCTCT GACTCCACTG
GATGCCGACC GTTCCACAGG GGTGGTGTTG ATAACCGATG GGGTGGCGAA TGTGGGCGTG
ACTGAAAAAC GGCGCTTCTT AGAGTTGATG CAGCAACAGG ATGTTCGCCT GTTCACCTTC
ATCATGGGCA ACAGTGCCAA TACGCCCCTG TTGGTACCCA TGACCCGCTT GTCCAACGGT
GTGGCAACCT CAGTCTCCAA CGCCGATGAT ATCGTGGGTC ATCTGATGAA TATCACCAGC
AAGCTGACTC ATCAGGCCTA TCGCAATATT CGCCTCGATA TGGATGGTGT GAAGATTAAC
GATCTGACCC CGCAGGAGAT AGCGAGTCTA TATCGGGGCG AGCAATTGGT GCTGTTCGGC
CATTATTTTG CTGCCGGTGA GGCCAAACTC ACCCTCACCA TGGACATAGG CGCAGAGTCC
CGCGAATACA GCACCAAGGT GATGCTGCCT GAGGCTGCTC TGGACTACCC AGAACTTGAG
CGGATGTGGG CGTTCTCTGC CATTAACGGT CTGCAGGAAC AGATGGACTA CCTGGAGCAA
AAAGACAGCG ACAAGGAAAA AGCCATTGAG GACATCGCCA TCGAGTATGG GCTGCTGACC
GACTACACCT CCTTGCTGGT GGTAGAAGAG GATGTCTTCC GTCAACTCGG TATCGAGCGG
GATAATCGGC GCCGGGTCAG TACAGAGCAG GCTGCGCGCA AAACAAGGGA AACGCAACCC
CCGGCACCAA CCCGCGCCGA CAAGCACCAG CCCATGTTCT CGCAGCCTCA GCCAACCCAC
TCTGGCGGTG GCGGAGGCGG AGGCAGTATG GGCCTGTGGA CGCTGCTGGT CCTCTTGCTG
CTGGGCAGAG TGCGGCTTGT GGACGTTAGG CCAAGCCGTT AA
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| Protein sequence | MGHPLTQMFR TMCLGSALVG LIWISPVADA AGLLKPVGSQ YRDMQIQSHH VEVVIQDGHA
TTAIEQTFYN PNPDTLEALY SFPVPQQAVV GEFIYWINDV PVVAEAVPRQ KAREIYEDQK
AQGNATALTE KDDYKRFDMR VFPVQPQQSV KVRLVYMQDA LLDHGVGRYL YPLEEGGVDE
ARDSFWQRNA VVEQDFSFNV TLRSAYPVDG VRLPSHPEAE IHQEMQAGAA LWRASLTSQP
ESLHTGAIES VSANEDTSQG AESGAAGEGK ASHQPRAMGL DKDIVFYWRL QEGLPGRVDM
VTYRDPKVST KGTVKLTFTP GDDLGPVTQG RDWVFVLDKS GSMNGKYATL VEGVRQGLGK
LPAQDRFRII LFDESTQEFS KGFVPVDSNN INQALAWVEG ISPGNGTDLY QGLKRALTPL
DADRSTGVVL ITDGVANVGV TEKRRFLELM QQQDVRLFTF IMGNSANTPL LVPMTRLSNG
VATSVSNADD IVGHLMNITS KLTHQAYRNI RLDMDGVKIN DLTPQEIASL YRGEQLVLFG
HYFAAGEAKL TLTMDIGAES REYSTKVMLP EAALDYPELE RMWAFSAING LQEQMDYLEQ
KDSDKEKAIE DIAIEYGLLT DYTSLLVVEE DVFRQLGIER DNRRRVSTEQ AARKTRETQP
PAPTRADKHQ PMFSQPQPTH SGGGGGGGSM GLWTLLVLLL LGRVRLVDVR PSR
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