| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3016 |
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| Symbol | |
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| ID | 4605263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3591042 |
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| End bp | 3592199 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782427 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928888 |
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| Protein GI | 119776148 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0864603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATCA AACCTTCGTC AGTAAACTCT ATGGCATTTT GGGGGAAACG GCTGCTCAGT
TACGCCAAAA CGGGTATAGA GCATTGTCAC GGCAAAACGC AGGAACGCCG GCTCATCCAA
ACAAATATCA GTGTGTTTAT TGCGGTCATC ACCATATTGG TGTTTAACCT TGCCTTTGTG
CTGCTTGGCA ATCCGGGGTT GATGTATTCA GGGCTGGTGC AACTCCCATT TTTACTGTTA
TTACCGCTGG TGCTTTGGTT CAACCGCAAA GGGCGAAGAC ACGAGGCGAC TCTGACCCTG
TTTTTATTGG TGATGCTGGA TGCGGTTAGC GCGCTTATGC TCGCTCAAGG GGTGACACTT
GGACTTCAGT ACTATTTTCT GATGTTTGCG GTGTTACCGG CATCCTATCT GGACGCCAAA
CATTGGCCGA CCACCTTACT GCTGTTTTTA AGTAACATTC TGCTATTTGG CTATTTCGAA
GTGTATGGCT GGCAAGCTCA CCCCAGCATT GCCGAAGTGC CGACATTCAC CATCACACTG
CTCAGAATAA TAATGGTGGG TTCATGCGCA ACCACGGTAT TGGTGGTTAT CCTGATAAGT
GAGTACTACG CTGCACAAAA TGAACAGGAA CTGCAATATC TTGCGGATAC GGACTCGCTG
ACCGGGCTGC CAAACCGGCG TGCTTTCATG GGGCGCCTGG AACGAACCAT CAAAGACAGA
CGATCCTTTA GCCTGCTGAT TATCGATGTT GACCATTTCA AGCAGATTAA CGACACCACG
GGGCACCAGA CTGGCGACGC TGCACTGCAA TTTTTGGCTA ACCAGCTTAA TGCGTGCATT
CAGGGGGAAG ACTTTGCCGG GCGGATTGGC GGCGAAGAGT TTGCTATGGT GCAGTTTTGC
GCTTCGCCAC TTGAGCATCT GGTCCGTGCC GAAAGTCTGC GAAAAACCAT TGCCTCGGCA
CATCCAGACC TGGGCGTTGG CCCCGTATAT TTAACGGTTT CCATCGGTGT GTGCATGGCA
ACACCGCCGG TGTCACTTAT CACACTGATG GCCATGGCAG ACAATGCACT CTATGAGGCC
AAACGCAGTG GTCGCAACTG CGTCCAGGTA GCCGCCGCAA AATCTGAATC CGTGCCGCCA
TGGCAGGCAG TTACATGA
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| Protein sequence | MIIKPSSVNS MAFWGKRLLS YAKTGIEHCH GKTQERRLIQ TNISVFIAVI TILVFNLAFV
LLGNPGLMYS GLVQLPFLLL LPLVLWFNRK GRRHEATLTL FLLVMLDAVS ALMLAQGVTL
GLQYYFLMFA VLPASYLDAK HWPTTLLLFL SNILLFGYFE VYGWQAHPSI AEVPTFTITL
LRIIMVGSCA TTVLVVILIS EYYAAQNEQE LQYLADTDSL TGLPNRRAFM GRLERTIKDR
RSFSLLIIDV DHFKQINDTT GHQTGDAALQ FLANQLNACI QGEDFAGRIG GEEFAMVQFC
ASPLEHLVRA ESLRKTIASA HPDLGVGPVY LTVSIGVCMA TPPVSLITLM AMADNALYEA
KRSGRNCVQV AAAKSESVPP WQAVT
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