| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2970 |
|---|
| Symbol | |
|---|
| ID | 4605217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3535999 |
|---|
| End bp | 3537672 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782381 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_928842 |
|---|
| Protein GI | 119776102 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.853836 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGC AACAAGCGCT GGGGTTGTTG GCGCTGGTGC TGTTTTCGCT GTTTGCCCAC
GCCCAGCCAC TCACACCGGA CGAACTGCCC GGGGATCCCC TGTCCCGGGA GTGGATGTAT
TTCATTGAGT CCGATAGGCG CATGAGCCCA GTTGACGCCA AAGCCGCCTT CGAGCGTGGA
CGTTTTGCAC CCCATGGCAA AAAGATACCC AGTTTGGGGA TAGGTGCCCC ACCGCTTTGG
CTGGCGCTGC CGTTACAAAA CCCGTCCAAT ACTGACGTTC AGCTCATTTT CGAGCTCGCC
AATGCCTGGC AGGATGAATT GGCACTCTAT CTGTTTGACC AAAGCGATCG CATGCAGGCC
TGGTACGGTG GCGATGTGAA TGCCAGGGCG GAAGATGGAC GTTTTATGCG CCAGTCTCTG
TGGCTGCCCC CGGGCAATCA CCTGCTCCTG CTCCGGGTGT CAGGTCCCGA TCCCAGGTTG
GTCCCCGTTT ATCTGACTAG CCCACAGCAA GCCAACCTGC GTAATCGCAT AGAACTGCTC
AGCTACGGAT TTCTCTATGG TGGCCTCTTT GCACTCCTGG GGTACAACTT TATCCTCTTT
CTGGGCATAG GCAGGCGTAG CTACTTTTAT TACTCGTTGT TTTTATTCAG CTTTATTCTG
CTTAATCTGA GCTATACCGG CCATGGTCAG TTCTGGTTCT GGCCCGGGCT GTCCCACTGG
CGCCAATGGT CACACCCCAT GTTAATGACG CTTTACTGCG TGTCCGGGCT GATGTTTGCG
CTGCGTTTTT TGGGTATCGA CAAGCTGCGC CCCCATCTGA GCTACATAGT ACTGGGATTG
GCGGTGCTGA TGATGACGGT CCAGGGCGTG GCCATGACCA CCGACGATCG CGAACTTGGA
CTCATCTTCG CCTTCGACTT TGTGTATATC TTTACCTTGC TGATGCCCCT CTTGGGCATA
CTCGCCTGGC TCCACGGGTT ACCCACCGCC AGGCTGTTTT TGTTGGCGTC CCTGTCGACC
ATGGTAGGCA GCTGCACAAC GGGACTGGCG GTTGAAGGCT ATATCAGTTT CAACCAGTGG
ACTTACCGTG CGGCCGAAAT AGGCATGTTT ATCGACGCCA TGTTGCTGGC ACTGGCACTG
GCGGCCCAGT TTCGCCAGTC AGAGCAGGAG CGCGTACTGG CCCAGCAGCT GGCGGCCACC
GATCCCCTTA CCGGTATTGC CAACCGGCGT GCCTTCAGTG AGCAATTGCA GCGACTGTGG
CACCTCGACA GCCAGCGTCG CTGTCGGGCG CTGATCATGA TAGACATCGA CAGGTTCAAA
TCCATTAACG ATACCCTGGG CCATGAGGTG GGCGACAAGG TACTGACCGA CATTGCCCGG
GTAATACGCT ACTCGATACG CAACCGGGAC CAGTGTGGCC GCTGGGGCGG TGAGGAGTTT
GTGGTCCTGC TGGCCTCTGC CAGCGAAGAG GAAGCCGGCA TTATCGCCGA GCGTATCCGC
CATAATATCG AAAGTCTGAG TTTTCCGGCG CCTGCCAACA AGCTTAAGGT CACCGCCAGT
GTGGGCGTGT GTCTGGATGA GGGACACAGC CGCCACGAAG ATATTTTGCG GCGTGCCGAC
GAGGCCATGT ATCACGCCAA GGATGCGGGC GGGAACAGGG TTAAACTCGC CTAA
|
|---|
| Protein sequence | MSLQQALGLL ALVLFSLFAH AQPLTPDELP GDPLSREWMY FIESDRRMSP VDAKAAFERG
RFAPHGKKIP SLGIGAPPLW LALPLQNPSN TDVQLIFELA NAWQDELALY LFDQSDRMQA
WYGGDVNARA EDGRFMRQSL WLPPGNHLLL LRVSGPDPRL VPVYLTSPQQ ANLRNRIELL
SYGFLYGGLF ALLGYNFILF LGIGRRSYFY YSLFLFSFIL LNLSYTGHGQ FWFWPGLSHW
RQWSHPMLMT LYCVSGLMFA LRFLGIDKLR PHLSYIVLGL AVLMMTVQGV AMTTDDRELG
LIFAFDFVYI FTLLMPLLGI LAWLHGLPTA RLFLLASLST MVGSCTTGLA VEGYISFNQW
TYRAAEIGMF IDAMLLALAL AAQFRQSEQE RVLAQQLAAT DPLTGIANRR AFSEQLQRLW
HLDSQRRCRA LIMIDIDRFK SINDTLGHEV GDKVLTDIAR VIRYSIRNRD QCGRWGGEEF
VVLLASASEE EAGIIAERIR HNIESLSFPA PANKLKVTAS VGVCLDEGHS RHEDILRRAD
EAMYHAKDAG GNRVKLA
|
|---|
| |