| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2877 |
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| Symbol | lysS |
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| ID | 4605124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3416440 |
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| End bp | 3417942 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782288 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_928749 |
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| Protein GI | 119776009 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAC ACATCCAAGA CGAGAACAAG CTGATTGCTG AACGTCGTGC CAAGCTGGAA
CACGTCCGCA AGAACTGCCC AGCCAATGGT CACCCGAACA CCTTCCGCCG TAAACACAAG
GCTGCCGAGC TTCAAGCGCA GTTCGGTGAC AAGACCAAGG AAGAGCTGGA AGCCCTGGGT
TTCCAAACCG CCATCGCTGG CCGCGTAATG GCCAAGCGTG GTCCTTTCCT GGTACTGCAG
GACGTGTCTG GCCGTATCCA GGCCTATGCC GATAAAGGCG TACAGGCCGA CTTGAAAGAC
CGTTATGCCG GTCTGGATAT CGGTGACATC ATCGGCGTGG AAGGTACCCT GCATCTGTCC
GGTAAGGGCG ACCTCTATGT GAACATGGAA CGCTACGAGC TGCTGACCAA GGCGCTGCGC
CCACTGCCTG AGAAATTCCA CGGTCTGACC GACCAGGAAA CCCGCTACCG CCAGCGTTAT
GTTGACCTCA TCGTGAACGA AGACTCACGT GAAGCCTTCA AAATGCGCTC AAAAGTGGTT
GCAGCTATCC GTAACTTCAT GATCAAAAAA GAGTTCATGG AAGTTGAAAC CCCAATGATG
CACGTGATCC CAGGCGGCGC TTCTGCCCGT CCTTTCGTCA CCCATCACAA TGCGCTGGAC
ATCGAAATGT ACCTGCGTAT TGCCCCCGAA CTGTACCTGA AGCGTCTGGT TGTGGGCGGT
TTCGAGCGCG TGTTCGAAAT CAACCGTAAC TTCCGTAACG AGGGTCTGTC GCCACGCCAT
AACCCGGAAT TCACCATGAT GGAATTCTAT ATGGCCTACG CCGACTACAA GGATCTGATT
GATTTGACCG AAGAGATGCT GTCCAGTATC GCCAAGGAAC TGCTGGGTGA CACCAAGCTG
CCTTACGGCG AGCACGTGAT TGATTTCGGC GGCCCATACA CCCGTATGAG CATGCTCGAA
GCCATCAAGC ACTACAACCC GGACAACGCC ACCATCCAGG CCATGACCTA CGAAGAAGTG
AAGAACATAG ACTTCATGCG TAAGCTTGCC AAGGACGTGG GCATCGAAAC CGAAACCTTC
TGGAGCTGTG GTCAGCTTCT GGAAGAAATC TTTGGTGAGA CTGCCGAGCC CAAGCTGATG
CAGCCAACCT TCATCACTGG CTACCCAGCG GACATTTCGC CGCTGGCCCG TCGCAGCGAT
GGTAATGATT TCATCACCGA CCGTTTTGAA TTCTTCATTG GTGGACGTGA AGTGGCCAAC
GGCTTCAGCG AGCTTAACGA CGCTGAAGAT CAGGACAACC GCTTCAAGGC GCAGGTAGAA
GCCAAGGACG CCGGTGACGA TGAAGCCATG TTCTACGATG CTGACTTCAT CACAGCGCTG
GAACACGGTC TGCCGCCCAC TGCTGGTCAG GGCATTGGTA TCGACCGTTT GGTAATGCTC
TTTACCAACA CTCACACCAT CCGTGACGTG ATCCTGTTCC CGGCCATGCG TCCTCAGGCG
TAA
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| Protein sequence | MTEHIQDENK LIAERRAKLE HVRKNCPANG HPNTFRRKHK AAELQAQFGD KTKEELEALG
FQTAIAGRVM AKRGPFLVLQ DVSGRIQAYA DKGVQADLKD RYAGLDIGDI IGVEGTLHLS
GKGDLYVNME RYELLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEDSR EAFKMRSKVV
AAIRNFMIKK EFMEVETPMM HVIPGGASAR PFVTHHNALD IEMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLI DLTEEMLSSI AKELLGDTKL
PYGEHVIDFG GPYTRMSMLE AIKHYNPDNA TIQAMTYEEV KNIDFMRKLA KDVGIETETF
WSCGQLLEEI FGETAEPKLM QPTFITGYPA DISPLARRSD GNDFITDRFE FFIGGREVAN
GFSELNDAED QDNRFKAQVE AKDAGDDEAM FYDADFITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQA
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