| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2875 |
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| Symbol | |
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| ID | 4605122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3412890 |
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| End bp | 3415091 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782286 |
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| Product | outer membrane protein |
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| Protein accession | YP_928747 |
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| Protein GI | 119776007 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.917114 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTGA CAACACACAG GGGCTATTCT TTGCTTTGGC TGGCCATGCT GGCCTGTGCC
TATCAGAGTC AGGCTGCTGA TAACGCCAGG GCAGATGCAC AGGCTGAAGA GCAGGCAACC
CAAATGCAGG CTGGGGCAAC GGGAGCTTCG CCTTCAGCAA TCGATACGAC CAAAAGCGAT
ATAGAGCGCA TTCAGGTGCT AAGCAGCCGC GGTCTGATTT CTTTCGTCAG TGCCTCTGCC
AGCAAGAGCA ATGTGCCCGT GGTCGAAACA CCCGTATCTG TCTCAGTGCT GACAGAAAAG
CGCATCACAG ATTTGGGCGC CGAGACACTG CAGGATGCCC TGGGCTATGT GGCCGGTGTC
TACAATGGCC CTTACGGTAT GGACTCCCGT GGCGACTGGT CACAAATTCG TTCGGTGTCG
CCGGTGAGCT ACCTCGATGG TTTGCAGCTG CTGTTTGGTA ACTACAACAA TGCCCGCCCC
AATCCGTACC TGTTGCAGCA GGTTGAAATT CTTAAGGGGC CTTCGTCTGT CCTCTTTGGT
CAGGGCAGCA CCGGCGGCAT CGTCAACATG GTCACCAAGC AGCCCACCGC GGCGCGCAGC
AACGAAATTT GGGCCCAGCT TGGCAACTAT CAGCGTAAGC AGTTGGCCGG TGACTTCACC
GGGGCTTTCG ATGAGGATGC CAATGTACTC TATCGCCTGA CGGCGCTGGT GCGGGACGCC
AACAGTCAAA CCGAGCACGT GGCCGACGAT GCCTTCTTTG TGGCGCCTTC TGCCAGCTTT
TATATTTCTG ACAATACCAA GCTGAGTCTG CTGAGCTATT TTCAGGATAA CCATACCGGG
TCCAGCACCC AGTTTTTCCC CCACGAAGGC ACCATTTTGC CTGCCAAATA TGGCCAGATC
CCCAGCGAGC GCTTTGTCAG CGAGCCGGGC TGGGACAGAT ACGATACCAG GCAGCACTCG
GTCACCCTGA GGCTGGAACA TGAATTTGAA TCCGGACTTC AGTTCAACTG GGCGGCCCGG
CAAATGGACT CCAGCGCCGA ATACCGCACC CTGTATGCCT GGCCGCCCAA GTTTCAGGAC
AACAAGCGCG AGCTGCTGCG CTCTGTTTAC CTGAGCGACG CCAGCGCCAG CGCCTTCACC
ACAGATCTGC AGCTCCACGG TGAGTTTGAC ACCGGGGCTT TAACCCACAG GGTTACGGTT
GGCGCCGACT ATCAGGATGT AGTGACAGAT AACGACAGCG CCTATCTTTC CGGCCAAGGT
GGCTTGATTG ATGTCTACCA GCCTGTGTAT GGGCAGGTCA GCCTGCCCGG TGATGAGGTT
ATCAGGGATA ACCCCAGTGC CAGCCAGCGT CAGCTGGGCC TGTATGTGCA GGACTCCATG
CGCTGGAATG ACTGGGTGCT CAGCCTGGGG CTGAGGCACG ACAGTCTGGA CGTGAAAAAT
ACCGCCGGCA TTAAGACATC ACCTTCGGCC ACCACTGCCA GGGCCGGGCT TATGTATGCC
TTCAGCGGAG GCATTTCGCC CTATATCAGC TATTCCGAGT CGTTCAATCC CATCGCCGGG
GTGTCCAAGT CCGGTGAGGT GTATAAGCCA AGGGAAGGCC AGCAGTGGGA GGCGGGCGTA
AAGTTTCAGC CCGAGGGGAC AGAGCATCTT ATCACCCTGG CCGGTTACCG CATTTTGGAG
TCCAATCGGG TGACTCAGGA TACGCCGGAG GCCATGAATC AGCTGGGTGA AGTGGAAATC
CGTGGTGTTG AGCTTGAGGC GCAGCTGGAG TGGGAACACT GGGACCTGTA CGGCAGTTAT
GCCTACAGTG ACTCTGAAAT CAAGGTCACC GACAAGGTGT ACGAGCAGGG GGCTCGTTTA
GCCGCCATGC CGGACAATAT GCTGTCTGTT TGGGCCACTT ATCGCCCCGA ACATTGGCTG
CCGGGACTGA AACTGGGCCT GGGCTATCGC TATGTGGGCC AGACATCCGA TGGCAGTGTG
GATGTGCTGT TGCCGGATGG CAGCTATGCC CACAAATCGC TGGAAACCGA CAGCTATCAG
ATGTGGGATA TGATGCTGGG CTACGAATGG GAGAGTTGGG ATCTGACACT TAATCTCGAT
AACCTCAGCG ACAAGACGGT GATTACCAGC TGCCTGGCGC GGGGGGACTG CTTCTATGGT
CAACAACGTC AAATCACGGC GAACGTGAAA TACCGATTTT AG
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| Protein sequence | MKVTTHRGYS LLWLAMLACA YQSQAADNAR ADAQAEEQAT QMQAGATGAS PSAIDTTKSD
IERIQVLSSR GLISFVSASA SKSNVPVVET PVSVSVLTEK RITDLGAETL QDALGYVAGV
YNGPYGMDSR GDWSQIRSVS PVSYLDGLQL LFGNYNNARP NPYLLQQVEI LKGPSSVLFG
QGSTGGIVNM VTKQPTAARS NEIWAQLGNY QRKQLAGDFT GAFDEDANVL YRLTALVRDA
NSQTEHVADD AFFVAPSASF YISDNTKLSL LSYFQDNHTG SSTQFFPHEG TILPAKYGQI
PSERFVSEPG WDRYDTRQHS VTLRLEHEFE SGLQFNWAAR QMDSSAEYRT LYAWPPKFQD
NKRELLRSVY LSDASASAFT TDLQLHGEFD TGALTHRVTV GADYQDVVTD NDSAYLSGQG
GLIDVYQPVY GQVSLPGDEV IRDNPSASQR QLGLYVQDSM RWNDWVLSLG LRHDSLDVKN
TAGIKTSPSA TTARAGLMYA FSGGISPYIS YSESFNPIAG VSKSGEVYKP REGQQWEAGV
KFQPEGTEHL ITLAGYRILE SNRVTQDTPE AMNQLGEVEI RGVELEAQLE WEHWDLYGSY
AYSDSEIKVT DKVYEQGARL AAMPDNMLSV WATYRPEHWL PGLKLGLGYR YVGQTSDGSV
DVLLPDGSYA HKSLETDSYQ MWDMMLGYEW ESWDLTLNLD NLSDKTVITS CLARGDCFYG
QQRQITANVK YRF
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