| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2810 |
|---|
| Symbol | |
|---|
| ID | 4605057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3348778 |
|---|
| End bp | 3349590 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639782221 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928682 |
|---|
| Protein GI | 119775942 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG5266] ABC-type Co2+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.629481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.656138 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC TTATTCCACT GACAGCATTG CTATTTTTAC CCCTGACCCA GGCCCATGAC
CGCTGGATAT TGCCTACCCA TTTCAATGTG TCTGCCGAAG ACGGCAAAGG GGTATGGATA
AGTGCTGACG TCAGCGCCAG CAATCAGGTG TTTGAGGTCG ATAAACCCTT TGGCGCCGAA
GATGTGCTTA TCGTCACCCC CGAGGGTAAC ACCGACAGGC CGAGTTCCAG CTACCGTGGC
AGTCGCCGCA GCGTGTTCGA TTATCAATTG ACCGGCGAAG GCACCTACCG CCTTGAGAAA
GAGGCCAAGC CGCGCTATTT CTCCCGTTAC AAAATCAAGG GACAGGACAC CCCGGTCAGA
AGCAACCTCG ACAAGGCTGC TACCCGCGCT GCCATGCCCA AGGATGCCGT GGAGCTCGAA
AGCGCGCTGT ATTTTTCCCG GGTCGAGTCC TATGTGACGC TCAATAAGCC CTCGGACAAG
GCCTTTGCAC CCAAGGGCGA GTATTTGGAA TTGGTTCCCG TGACCCACCC GGCAGACTTT
GTGGAAGGCG AACCTTTGAG CCTCAAGTTG CTGTTTAACG GCAAGCCGGC AGAAGGAGTG
AAAGTGAATG TGGTCGCCGA TGGCACCCGT TACCGCAATC AGATTGAAGA AGTGAGCCTG
GTCAGCGACA AAGCGGGACT GGTGCAGTTT ACCCCTGCCA GGGCGGGTCG CTTTTTGCTG
CACGCCGAGT ACGAAGAAGC GATGAAAGAT ACCCGCCTCG CCGACAAGAC GGTCAGCGAA
ATCTTTTTAA CCTTCGAAGC GTCATTGCAA TAA
|
|---|
| Protein sequence | MKRLIPLTAL LFLPLTQAHD RWILPTHFNV SAEDGKGVWI SADVSASNQV FEVDKPFGAE
DVLIVTPEGN TDRPSSSYRG SRRSVFDYQL TGEGTYRLEK EAKPRYFSRY KIKGQDTPVR
SNLDKAATRA AMPKDAVELE SALYFSRVES YVTLNKPSDK AFAPKGEYLE LVPVTHPADF
VEGEPLSLKL LFNGKPAEGV KVNVVADGTR YRNQIEEVSL VSDKAGLVQF TPARAGRFLL
HAEYEEAMKD TRLADKTVSE IFLTFEASLQ
|
|---|
| |