| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2531 |
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| Symbol | |
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| ID | 4604778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3040686 |
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| End bp | 3041645 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639781926 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928403 |
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| Protein GI | 119775663 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.53987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.903036 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTG CACCCGAACA CATACTGAAT TCTGTTGCTT CTATTACCGA GCAGCGTCAG
TTGCAGTCAC TTGCCACCTG TTTGATTGAA ACCATTGAGC AAACCTTAGG GGTAAAGCAG
GTTGCGGTTA TCAATGTGGG TGATTTGCCT CATTTTCCAA AATTCCTTAC CTCAACCGAT
TTCGTGCTGG CACTGGATAA TCCACCACCC TGCGTGCAGC GCTGCATCGA TACCGGTAAG
AATGCGATTT GTGAGCAGGA TGAGCGCTGC AAGGTCGCGC TGCCGGTCAA AATGAATGAT
GCCGTGGTTA AGGTACTTTT GGTCTATGAC CTCGACTTGA ATAATGCCAA CCTGATGATG
CTGCAGGCAT TCGCCCGTAT TTACGAAAAC TTTGCCCGGG TTGTTCTCGA CAGCCAGACC
GATGGCTTAA CCGGCCTGCT TAACCGCAAG GCCTACGATG CCCGCCTGTT TCATCTTTTC
AGCCACATTC GTACCGAAAC CCGCAGGGCA CCCTATTTTT GGATGCTGAC GTTTGATATC
GACTTCTTCA AGAAGATTAA CGATACCCTG GGCCACCTAT ACGGGGACGA AGTCCTGCTT
CGGATTAGCC GGGCAATGAA TGACTGCTTC AGTGACGACG ATGCGTTATT CCGCTTCGGG
GGCGATGAAT TTGTGGTGCT GCTGGACAAC AAATCTCAGC ATGAAGTCGA ATGTATCTGT
CGTAAGCTGA TGGCTGACGT CGGTAAAGTC CATCACGAAA AAACCGGACC TGTCACGCTT
TCTATTGGGA TAACGTCACT GACCCTCGAA GATAACCCCA TGTCTGTGAT GATGAAAGCC
GACAAAGCTC TCTACTTTGC CAAAGACAAT GGTCGCAACA GATGGGCCTT TTATCATGAC
CTCTTCCATC ATGGTGATTT GCTGCCGACG CAAATTGATG ACGATATAGA GCTGTTTTAG
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| Protein sequence | MSSAPEHILN SVASITEQRQ LQSLATCLIE TIEQTLGVKQ VAVINVGDLP HFPKFLTSTD
FVLALDNPPP CVQRCIDTGK NAICEQDERC KVALPVKMND AVVKVLLVYD LDLNNANLMM
LQAFARIYEN FARVVLDSQT DGLTGLLNRK AYDARLFHLF SHIRTETRRA PYFWMLTFDI
DFFKKINDTL GHLYGDEVLL RISRAMNDCF SDDDALFRFG GDEFVVLLDN KSQHEVECIC
RKLMADVGKV HHEKTGPVTL SIGITSLTLE DNPMSVMMKA DKALYFAKDN GRNRWAFYHD
LFHHGDLLPT QIDDDIELF
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