| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2452 |
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| Symbol | |
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| ID | 4604701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2955205 |
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| End bp | 2957274 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639781849 |
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| Product | glycogen operon protein |
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| Protein accession | YP_928326 |
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| Protein GI | 119775586 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATT TGCACCGGCA ATGCGGGGTT TGGCTCTTTA ACGAAGATGG CGTCAGCAAG
GCGCACTTCG GGGTGTTCAG TCGCCATGCC AGCGCTGTGT TCCTGTGCCT ATTCGATGAA
GAGGGGCGGG AGTTTTCCTA TCCCATGAAG CGCCGTGGTG ATTTTTGGTC ACTGACTCTG
GATGGCATTG GCGAGGGGCA GGCCTATGGT TACCGCGCCG ATGGTCCCTG GGCGCCGGCG
GCTGGTCACA GGTTTGACCC GGCTAAATTG CTCCTGGACC CCTATGCCCT GGCGATTGAT
GGTTTGCCAA CGCTGGCGGT TGCCCAGGCG GCTCAGGGCT CGGCCGGTCC ACAGGACCCG
CATTTTGCGC CCACTCCAGA TGGGGCAGAC AATGCCACCC TGATGCCAAG ATGCAGGGTG
GTGGATGTGG CTGCCTTGCC GCCCTTTGTG CATCCCAAAC CCGGTTATGC CATGGAAGAG
AGCGTGATTT ACGAGCTTCA TGTGAAGGGA TTTTCCATGG GTTTTCCCGG GGTGAAGCCA
GAGCACAGAG GCCGCTTTGC CGCCCTCGCA GCACCTGAGG TTATCCAATA TCTGAAGCGG
CTGGGGGTCA CGGCTCTGGA GCTGATGCCC TGCCAGCAGT TTTTCGATGA GCCCTTTTTA
CATGCCAAAG GCCTGTCCAA TTATTGGGGT TATAACAGCA TCGGCTTTTT CGCCCCCCAC
AATGCCTATG GCGACATCCG CGAGTTCAGA GCCATGGTGG ATGCCCTCCA TGGCGCCGGT
ATCGAGGTCA TTCTGGATGT GGTCTACAAC CACAGCGCCG AAGGCAATGC CATGGGGCCG
GTATACAGCT TCAAGGGGCT GGACAATGCC TGCTATTACC GCCTCACCGA TACTGGCCAT
TACATCAATG ATACCGGCTG CGGCAACACC CTGGATTTGG GGCAGCCCAG AGTGCTTGAG
CTGGTGATGG ACTCACTGAG GTACTGGGCT TTGGTCGGCG GAGTCGACGG ATTTCGCTTC
GATTTGGCCG CCTGTCTGGG CCGTATGCCC CATGGCTTTG ATACCCACAG TGGCTTTTTT
GCCGCGCTCG GGCAGGACCC TGTGCTTAAA CACCTCAAGC TTATCGCCGA GCCCTGGGAT
GTGGGCCCCG GTGGTTATCG CCTCGGCGAC TTCCCCGCCG CCTTTGCCGA GTGGAATGAT
AAGTATCGCG ATGCCATGCG CAGACTCTGG CGTGGCGATG AGCAAATTCT GGGTGAATTT
GCCCGGCGTT TTCATGGCTC GGCGGATCTC TTCGAGCCCT CCTTCCGTGG TCCCTGGGCC
AGTGTCAATT TTATCGCCAG TCACGATGGT TTCACCCTGA GGGATCTGCT GAGTTACGAG
CAGCGCCACA ACCTTGCCAA CGGTGAAGAC AATCGCGATG GCCATCAGGA AAACCTGAGC
CACAACTTCG GCGTGGAAGG AGAGGCCACC GAGCTGGTGG CGGCCCGAAA ACACAAGGCC
AGGGCGATGC TCGTTACCCT GTTTTTCTCC TTTGGGATAC CCATGCTGCG GGCCGGAGAT
GAGCTGTGGC AAACCCAGCA GGGCAACAAC AATGCCTACT GTCAGGACAA TGCACTCACC
TGGATTGATT GGGAAAGCGC CGACACTGAG CTCATCGACT TTGTGGCCGG GCTTATCCAT
ATCCGGCGGA AGCTGCCGCT GCTCGCGGCC ACCCGTTATA TCCATGGCAA TAACCCGGAC
GATGGCCGCA AGGGTCCGTT TCTGGCCTGG TTCAACGAGT CCGGCCTGCC CATGGCGGGC
ACCGACTGGC ATCGCTGCGG CCCGCTTATC GCTGCGCTGG GTGAGCATCA TCCTCTGCGG
GGCTCGGAGC TGTTACTGAT TTTGATAAAC CCCAGTCAGT CGGCGGTGGA CATCAGTCTG
CCCCTGTTTG CCGTGTGGGA GCAATTGCAC AGCCTGTGCG GTAACAGCGA TATGCCGGCG
CGGATAGAGG CGGGCGACAC CCTGACGCTA CCCGGCGTCA GTATCTGGAT TTTTCACGGA
CACAGGGATG CCGACCCCGG CACTCAATAA
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| Protein sequence | MSDLHRQCGV WLFNEDGVSK AHFGVFSRHA SAVFLCLFDE EGREFSYPMK RRGDFWSLTL
DGIGEGQAYG YRADGPWAPA AGHRFDPAKL LLDPYALAID GLPTLAVAQA AQGSAGPQDP
HFAPTPDGAD NATLMPRCRV VDVAALPPFV HPKPGYAMEE SVIYELHVKG FSMGFPGVKP
EHRGRFAALA APEVIQYLKR LGVTALELMP CQQFFDEPFL HAKGLSNYWG YNSIGFFAPH
NAYGDIREFR AMVDALHGAG IEVILDVVYN HSAEGNAMGP VYSFKGLDNA CYYRLTDTGH
YINDTGCGNT LDLGQPRVLE LVMDSLRYWA LVGGVDGFRF DLAACLGRMP HGFDTHSGFF
AALGQDPVLK HLKLIAEPWD VGPGGYRLGD FPAAFAEWND KYRDAMRRLW RGDEQILGEF
ARRFHGSADL FEPSFRGPWA SVNFIASHDG FTLRDLLSYE QRHNLANGED NRDGHQENLS
HNFGVEGEAT ELVAARKHKA RAMLVTLFFS FGIPMLRAGD ELWQTQQGNN NAYCQDNALT
WIDWESADTE LIDFVAGLIH IRRKLPLLAA TRYIHGNNPD DGRKGPFLAW FNESGLPMAG
TDWHRCGPLI AALGEHHPLR GSELLLILIN PSQSAVDISL PLFAVWEQLH SLCGNSDMPA
RIEAGDTLTL PGVSIWIFHG HRDADPGTQ
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