| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2391 |
|---|
| Symbol | |
|---|
| ID | 4604640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2871106 |
|---|
| End bp | 2872278 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781788 |
|---|
| Product | isoaspartyl dipeptidase |
|---|
| Protein accession | YP_928265 |
|---|
| Protein GI | 119775525 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0044] Dihydroorotase and related cyclic amidohydrolases |
|---|
| TIGRFAM ID | [TIGR01975] isoaspartyl dipeptidase IadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.298373 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAACTT TGATCAGAAA TGCCAACCTT TTTACGCCTT CAGCGGTTGG TTTACAGGAT
GTGCTTTTTG GCACTGGTGG CGTTATCACC ATCGCAGAGC CGGGCTCGCT GCATGTCGGT
TCCTTGCCAT GCCATGAAGT CGATGCCAAA GGCAGTGCAC TGGTACCTGG GCTCGTTGAT
CCGTTGGTAC ACATCAGTGG CGGCGGCGGA GAAGGCGGCT TTCATACCCG CACCCCTGAG
ATGCAATTGA CTGAGGCCAC ACTGGCAGGA GTCACAACCC TGGTGGGGGC ACTGGGGACA
GATGCCGTCA GTCGCAGCCT GGAAGACTTG CTTGCCAAGG CGCGCGGTTT GGCGAATGAA
GGCTTAACCA CCTATATCTA CACCGGCTCT TACGAGTATC CGGTCAAAAC CCTCACAGGG
GACATTACCC GGGACATGAT GCTGATTGAC AAGGTAATTG GCGTAGGTGA AATCGCCATT
GCCGATCATC GTGGCTCGCA GCTTTCTGCC GCTGAACTGG CCCGCGTTGC CAGCCAGGCA
CGGGTGGGAG GCATGTTAAG CGGAAAGGGC GGCATAGTGT TTGTACATGT GGGGGATGGT
AAAGGCGGGC TGGATATCCT GTCTGAGGTT GCCGGCACCA CCGATATTCC GCTGTCGCAA
TTCTATCCTA CCCACATTAA TCGTTCCCGT GCATTGCTCG AGCAGGGCGT TGCCTTTGCC
CTGGCCGGTG GCGTGATTGA TTTCACGGCC TCTGAAAACA GCGCCACCTT AAACAGTGAC
GAAATCAGTG CGATAGATGC GGTAAAGCAT GCCCTGGCGG CTGGCGTGGC GGTATCACAA
ATTACCTTAA GCTCCGATGG CAATGCCAGT TTGCCGGTAT TCGATGCCGA TGGTCGCTTA
ACCGGCCTCG AAGTGGGTCG GGTCGGCAGT CTGGCAAAGG CATTTCGTGA CCTTATCAGC
GAAGGTATTG CCGTGGCCGA TGCCCTTGCC ATGACCTCCT CCAACGCAGC CCGAATATTG
GGGCTTGATA CCAAAGGGGC CATCGCTGAG GGGAAAGACG CCGATTTGGT GCTGCTGAAT
GACCAGTTCG AGCCTGAATT TGTGTGGTGC CTTGGCAAAG CCATGGTTGC CAATGGCCTG
CCACTGGTTC GGGGAACCTT TGAGATAGTC TGA
|
|---|
| Protein sequence | MLTLIRNANL FTPSAVGLQD VLFGTGGVIT IAEPGSLHVG SLPCHEVDAK GSALVPGLVD
PLVHISGGGG EGGFHTRTPE MQLTEATLAG VTTLVGALGT DAVSRSLEDL LAKARGLANE
GLTTYIYTGS YEYPVKTLTG DITRDMMLID KVIGVGEIAI ADHRGSQLSA AELARVASQA
RVGGMLSGKG GIVFVHVGDG KGGLDILSEV AGTTDIPLSQ FYPTHINRSR ALLEQGVAFA
LAGGVIDFTA SENSATLNSD EISAIDAVKH ALAAGVAVSQ ITLSSDGNAS LPVFDADGRL
TGLEVGRVGS LAKAFRDLIS EGIAVADALA MTSSNAARIL GLDTKGAIAE GKDADLVLLN
DQFEPEFVWC LGKAMVANGL PLVRGTFEIV
|
|---|
| |