| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2342 |
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| Symbol | |
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| ID | 4604592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2808408 |
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| End bp | 2809520 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639781740 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_928217 |
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| Protein GI | 119775477 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.588824 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGA TGAATTGCCA CAGGTGGATA AAACACCTGC CCCTGCTTCT GGGGCTGGGT
GTATTGTCTG CCTGTCAGGA AAAGGATGCC GGGCCATTCA ATGACAGCAC TCCGCCCACC
GTAATCACCC AGAGCCTGAG TCTGAGTGAC GGCTATCAAA GGCCGCTGGA ATTCAGTGGC
ACCATCCGCG CTGCCAACAC CACTGGTGTG GGCTTTGAAT TGGCAGGCAA GCTCAGTGGC
CTCTATGCCG ACAGTGGTGA CAGGGTACGA AAAGGCCAGC AGCTTGCGGC ACTTGATACC
AGTTTACTTA AAGCCGAGCA GCAGGAGCTT CAGGCTGCAT TGAGCCAAAA CAGCGCCGAT
CTCAGTCTGG CCCAATCTAC GCTGAAGCGA AGCCTGGAAC TCAAAAAACA AGGATATGTG
TCCAGCCAAC AACTGGATGA ACTCGAAGGG CGACTGGGTA GCCTAGAAGG AGCCCGGGAG
CGCCTTAAAG CCAGTCTGTA TGCCAATACC CTCAAACTGG AAAAATCCCG GCTATTGGCC
CCGTTCGATG GCAGTATCGG TAGCCGCAGT TTCAACCTGG GCGAAGTCGT TCCCCTGGGG
CAACCGGTGT TCGTATTGGT TGAAGACAAA GCCGCTCAGG CCCACGTCGG GGTACCGGCG
GACATCGCCA AAAGCCTCAC CCAGGGGCAA CTGATGGACT TACGTGTTGG CCGTGAGCAC
TACCGCGCCG TGCTTGCGGG GATCAACCCC TCCATCGACC CTGTTACACG CACCGTTGGG
CTAAGACTGT CACTCCCCTC CGATGCCGGC GTCCTTAACG GTGAGATTGC CTACCTTCAT
TATCAGCAGC AGGTAAATAC GCCCGGCTAC TGGGTGCCAG TCTCGGCACT CACCGATGGC
CTTCGGGGCC TTTGGAACCT TTATGTGGTT GAACCCCGTG GAGAAAACGA ATTTGTGGTC
GAGCGCCGGG ACGTGGAAAT CCTCTTTACC GATAGAGACA GGGCCTACCT CATTGGCGCC
CTGAATGCGG GGGATCAAAT CGTCACTCAG GGATTGCATA AATTGGTGGT GGGCGAGCAT
GTCCAGCCCA TGACAGCCCT TGCCACGAGG TAA
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| Protein sequence | MNAMNCHRWI KHLPLLLGLG VLSACQEKDA GPFNDSTPPT VITQSLSLSD GYQRPLEFSG
TIRAANTTGV GFELAGKLSG LYADSGDRVR KGQQLAALDT SLLKAEQQEL QAALSQNSAD
LSLAQSTLKR SLELKKQGYV SSQQLDELEG RLGSLEGARE RLKASLYANT LKLEKSRLLA
PFDGSIGSRS FNLGEVVPLG QPVFVLVEDK AAQAHVGVPA DIAKSLTQGQ LMDLRVGREH
YRAVLAGINP SIDPVTRTVG LRLSLPSDAG VLNGEIAYLH YQQQVNTPGY WVPVSALTDG
LRGLWNLYVV EPRGENEFVV ERRDVEILFT DRDRAYLIGA LNAGDQIVTQ GLHKLVVGEH
VQPMTALATR
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