| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2253 |
|---|
| Symbol | |
|---|
| ID | 4604503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2716019 |
|---|
| End bp | 2717179 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639781650 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928128 |
|---|
| Protein GI | 119775388 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0192058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00258376 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGAGAATA AAAAAAGTAC ACAGATATAT GTTGTCGTTC ATTCATATTA TACTGAAGAC
ACCCGGGTAA GAAAGCAATG TGAATTTTTA GCTTCAGAGG GATATGATGT AAATGTTATT
TGTCTAAATA GAGGTCGAGA ATCTGAATTT GAAATTTTTA ATTTAGTTAA GATTAATCGT
AAAGACGTTT CTAGAACTCC TGGCAAATTG AGGACTACAT TATCTTATAT AATAGAATAT
GTGAGGTTTT TCTTTTTTTC ATTAATTCAT TTATATAGGG TGAAACCAGA TCTGGTAATT
GCTCATAATA TGCCAAATTT TTTGGTATTC AGTGCACTTT TCCCTAAATT AAGAGGTGTT
CCTGTACTTC TCGATGTACA CGATTTAATG CCAGAGATTT GGAGCATGAT GAGTCAGAGT
CGACTAATTA AAGCTTTGTT GCTTTTTGAG GAACGTATAA GTCATGCATT CGCTACTCAA
TTAATTACTG TAAATCATGA AGTAGCAACT TATTTGAGTA GAAGGAATAA AAAAAAATAC
TTTGTAACTC ACAACGGTCC ATTAACTAGT AAAGCTGTAA GGTCGAGAAG TTATGAAAAC
TATTGTGCTA GTAGATTTAA TCTAGTATTT CACGGGAATA TACACGAGAG ATATGGCCTT
CAACGACTAG TTTCAATTTT ACCTACGTTG AAAGAACGAT ATCAAAAAAT TAACCTAAGT
ATCTATGGCT ATGGTCCCTA TTTGGAATCA ATCGAAAAAC TAATTGACGA ATTAAATATA
GCTGATTATT GTAAAGTTTA TGGGCGCTTT GAACCTGACG ATGTAGAGGT GATACTAGCG
AATAAAGGGC TGGGCTTTGT TGTTGCCGAT AAAAGCGCGC AGCATGATCT CGCAATTCCA
GTTAAGCTAA CTGAGTATAT TTCTCACTCA GTCCCTGCGA TTTGTACTGA TTTAACTACT
ACTAAATTAT ATTTTGAAGG CTGCGTGAAT TTTTTTGATG TAACTGAAAA AAATAGATTG
TTTGACACGG TTTGTAACGC TTTGGACCAT CCGAAAGATA CATTCTCTTT AGTCTCAAAG
GCAAAAGAAA AACTATCTGA AATTTCTTGG GATAACGAAA AATCTCACTA TAAGGCTTTT
CTACAGCAGG TGATTAAGTG A
|
|---|
| Protein sequence | MENKKSTQIY VVVHSYYTED TRVRKQCEFL ASEGYDVNVI CLNRGRESEF EIFNLVKINR
KDVSRTPGKL RTTLSYIIEY VRFFFFSLIH LYRVKPDLVI AHNMPNFLVF SALFPKLRGV
PVLLDVHDLM PEIWSMMSQS RLIKALLLFE ERISHAFATQ LITVNHEVAT YLSRRNKKKY
FVTHNGPLTS KAVRSRSYEN YCASRFNLVF HGNIHERYGL QRLVSILPTL KERYQKINLS
IYGYGPYLES IEKLIDELNI ADYCKVYGRF EPDDVEVILA NKGLGFVVAD KSAQHDLAIP
VKLTEYISHS VPAICTDLTT TKLYFEGCVN FFDVTEKNRL FDTVCNALDH PKDTFSLVSK
AKEKLSEISW DNEKSHYKAF LQQVIK
|
|---|
| |