| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2151 |
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| Symbol | |
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| ID | 4604401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2597618 |
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| End bp | 2600431 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781536 |
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| Product | hypothetical protein |
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| Protein accession | YP_928026 |
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| Protein GI | 119775286 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00179894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTTC GTACCTCCTA TCTCGTGGGC ATTCTGGCCT CTGTCCTGGC CGTATCCACC
ATTCCCCAGT TCTCCGAAGT CAGAGCCGCT GAGCCGCTCA AAATCACAGG TCCGGACGGT
CAAAGTCGTG AAACCCAGTC GCGCCAGTAT GGTCCTACTA CGGTGCAGGA TACCTTCTGG
AGCATTGCCC AAAAAGTTCG CCCGGATAAC AGTGTCAGTG TTTATCAGGT AATGGCGGCG
ATTTATGATG CCAACCCCCA TGCCTTCAGC AGTGCCAATT ACAATACCCT CGAAAAGGGC
ATGATACTGC TCATTCCGTC CAAGGAAGTA ATGCTGGCCA TTCCCAAAAA TCTGGCTCAG
CAAAGAGCAC TGGAGCAAGA CAGGGCATGG CGCACCGGCA AGGTTGAACC AAAGCAGGCT
ACAGCCAAGC CCGTCACAGC TAAACCTGCT GCGCAGGAAG CGCCCAAAGC CGTTACCGAA
CCTGCTAAAG TTGAGGCGAA ACCCGCTCCC GTACCTGTTG TAGATCCCAA GCTGGTTGAA
GAGAACCAGG CGCTGTCGGC CGAGATAAGT CGTCTGACCG AAGAGCTCAA TGTACGCAAA
AATGATGTTG AGTCGCTGAG CGCCCAGGTT GAGCAGTTGA CCGAAGAAGT GCAAACCCTG
AAAGCCAACC TGGCCGCGAC AACGGAAGAG TCAGAAGCAC TGAGGACTGA AAATAAAACG
CTGAAGCAGG CACAGGCACT GGCTGAGGTT GAAGCCAATA AGCCCGGCGA ACTGTGGCGC
AGTCTCATGG ACAGCCCCCT TATGCTTATC CTGGGTGCCG TTGTGCCCGC ACTCCTTATT
TTGATGGCGG TATGGCTGTT CCTGCGCCGT CGCCGTGGCG GAGCTGATGG CGATGTGGGT
GAGACAGCCA AATCTGCTGA TGCGCCCCTG GCAGCGGCCG CTGCCGCGGG GGCTGTTGCG
GTGGCAGCCA GCGCCGACGA GGAAGAAATG GCCATCCGTT TGGATCCAGA AGAAGAGGAG
TCTCTGGATT CGCTGCTGGA CATGGGCAAT GTTGATCTGG CGCCTGAAAC CTTACCTGAA
GAAACGTCTG CAGATCTTTT TGTCGAGCAA GCTGATGATT TTGCCGATGA TGGCCAGTCT
CTGGATGATC TCTGGGCCGA GGCGATGGGC GAGCAGGACG AAGGTGAGTT GAACGCAGAG
GCGGAAGCTG ATTTGGACGC CTTGATGGCG GGCTTTGAAG AAGAGACCCC TGACGTCGCG
AAAGAAGAAG ATTTGGATGC GCTGCTGGCT GGATTTGACG AGCCAGAGCA GACCATCACT
ACGACTGAAG AGTCCCAGCC TGAGAAAGAT GAATTGAGTG ATGCCATAGC GGCTGAGCTC
GAGACAGAGG TTGCGGATGA CACTGTCAGC GAAGACGACC TCGATGCACT GCTGGCGGGC
TTTAATGAGC CGGTTGAAGC CATGGCAGAG TCTGTGGCTG ATAGCGATGA GGCTCAAAGT
GATGATCTGG CAGAGGCCAT TGCCGCCGAA CTTGAGTCTG AACTGGCGGG CAATGATGAG
GTGAGCAGCG ATGAGGATTT GGACGCGCTG TTAGCGGGGT TTGATGCCCC ATCAGCAAGC
GACGATGGCG AGGATGACCT TAAAACGCCG TCAACGGAAA CCCTCGAAGC GGACTGGTCA
GAGGCCATTG CTGCAGAGCT CGAAGGCGAA GTCGCGGCCG AAGCAGAAGC AGAAGAGGAT
CTTGATGCGC TGCTGGCAAG CTTCGCGACT GAAAGCGAGT CTGAAGCATC AAACGGCCTG
GAAAACTCCG CAGATGACGT GTTGGCTGCC GATGAAACAA CCAGCCCGGT TGATGATGCC
TTTGCCAACG TGCTTGAAAG TGAGCTTTCT TTAGCCGACG AAAACGCTGA CGAAGACCTG
AACGCACTGC TGACTGACTT AGACAAAGGC GATGAAGCCC CGATTGAGGA TATTACTGCG
GGTCTTGGTG ATGAGCTGCC GCTCAGCGAT GAAGATGACG ATCTTGATTC TTTACTGGCA
GGTTTTGATA AAGAAGAAGA GACTGGGCTT GAAGACGCTG CGTTAGCGGC AGCTGCGGTA
GCCACGGCGG CCTCAATCAG TGCGGCCACA TCAAATAAAG AGTCCGAGAA AGCATCAGAG
AAAGACAAGA CCGCTGAGAA AGGTGCGCAT GATGCCGATC CTGTGGCCGT GTCAGCCAAA
GATTCAGGCT TCTTTGATGA TCTTAAGGGT AAAAAAGGCG CTGCCGGCAG CAATATGCTG
GAGTGGGAAA GTATCGCTCC ACCGGATACC AAAAAGCCTT CATTGGATGT GAGTGATGAT
GAGCTGCTGT CGGCCTTTGC TGCAGAACAT GATGACTCAG ATGACGATGC CTTTGTGCTG
GATGTGGATG CCGACCACAG CATGACAGTG GATGAAGCGC TGGCCGCACT CGACGCCAGT
GAAAAGTCCA AGCGGCAGAG TAAAGCAGAA ATAGATGCTG ATCTCAGTAA CTTCCAAAAA
GAGAATGGCT TTATTGATAT CGATAAGCTG CTCAATGATG CAGATGATAC CGAACCAGAA
CCTTATCGCG AGTTGGATAT GGATATAGGC GAAGTTGAAA GCCTGATTGG CGGTGCCGCC
ATGGTCGACG TGGACGATGA GGAAAATTCG GTCAATGCCA AACTGGATTT GGCCCGTGCC
TACATCGAAA TTGACGACAA AGACAGCGCC AAAGCCCTGC TCAAAGAAGT GGAAATGGAC
GGTAACGAGC GTCAAAAACA GGAAGCGGCC AATCTGTTGC AAGACATAGG CTAA
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| Protein sequence | MNFRTSYLVG ILASVLAVST IPQFSEVRAA EPLKITGPDG QSRETQSRQY GPTTVQDTFW
SIAQKVRPDN SVSVYQVMAA IYDANPHAFS SANYNTLEKG MILLIPSKEV MLAIPKNLAQ
QRALEQDRAW RTGKVEPKQA TAKPVTAKPA AQEAPKAVTE PAKVEAKPAP VPVVDPKLVE
ENQALSAEIS RLTEELNVRK NDVESLSAQV EQLTEEVQTL KANLAATTEE SEALRTENKT
LKQAQALAEV EANKPGELWR SLMDSPLMLI LGAVVPALLI LMAVWLFLRR RRGGADGDVG
ETAKSADAPL AAAAAAGAVA VAASADEEEM AIRLDPEEEE SLDSLLDMGN VDLAPETLPE
ETSADLFVEQ ADDFADDGQS LDDLWAEAMG EQDEGELNAE AEADLDALMA GFEEETPDVA
KEEDLDALLA GFDEPEQTIT TTEESQPEKD ELSDAIAAEL ETEVADDTVS EDDLDALLAG
FNEPVEAMAE SVADSDEAQS DDLAEAIAAE LESELAGNDE VSSDEDLDAL LAGFDAPSAS
DDGEDDLKTP STETLEADWS EAIAAELEGE VAAEAEAEED LDALLASFAT ESESEASNGL
ENSADDVLAA DETTSPVDDA FANVLESELS LADENADEDL NALLTDLDKG DEAPIEDITA
GLGDELPLSD EDDDLDSLLA GFDKEEETGL EDAALAAAAV ATAASISAAT SNKESEKASE
KDKTAEKGAH DADPVAVSAK DSGFFDDLKG KKGAAGSNML EWESIAPPDT KKPSLDVSDD
ELLSAFAAEH DDSDDDAFVL DVDADHSMTV DEALAALDAS EKSKRQSKAE IDADLSNFQK
ENGFIDIDKL LNDADDTEPE PYRELDMDIG EVESLIGGAA MVDVDDEENS VNAKLDLARA
YIEIDDKDSA KALLKEVEMD GNERQKQEAA NLLQDIG
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