| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2131 |
|---|
| Symbol | trpD |
|---|
| ID | 4604381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2576274 |
|---|
| End bp | 2577308 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639781516 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_928006 |
|---|
| Protein GI | 119775266 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.455869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG ATGTAAGACA ACTCCTGGAT AAAACCTACG GCGGTAACCC ATTATCCCGC
GAAGAAGCCA AATGCCTTTT TGCCTCGCTG GTGAGGGGCG AGCTCGATGA GGTCACCATA
GCGGCGCTTT TGATGGCCCT CAAGGTGCGG GGCGAAACCA TCGACGAAAT CAGCGGCGCG
GCCGATGCCA TGCGCGAAGC GGCCAATTCC TTCCCCCGGC CCGCACTTGA TGGTGGTATT
TTGGATATCG TCGGCACCGG CGGTGACGGC TTCAACACCA TCAACATTTC CACCACAGCG
ACCTTTGTGG CGGCGGCTGC AGGCGCCAAT GTGGCCAAAC ATGGGAATCG CAGCGTATCG
TCCAAATCCG GATCGTCGGA TCTCCTCGGC CAGTTCGGCA TCGAGTTAAC CATGGCGCCA
CAAACGGCGG CCAATTGCCT TGAAGCCCTG GGTATTTGTT TTCTGTTTGC TCCCCATTAC
CACGGTGGAG TAAAACATGC GGTGCCGGTA CGGCAAAAGC TCGCTACCCG CACCCTGTTC
AATGTACTCG GGCCCCTGAT TAATCCCAGT CACCCCGACT TTATGCTGCT TGGGGTGTAC
AGTGAGACGC TGGTCCGCCC CATCGCCGAG GTGCTCTGCG CCCTTGGGGT AAAACGCGCC
ATGGTGGTAC ATGGCGAAGG GCTGGATGAA GTGGCGCTCC ACGGCACAAC TCAGGTGTGC
GAACTCAGAA ACGGTGAGCT TGTGGATTAC TCGCTGTCAC CAAAAGACTT TGGGCTTGAA
CCTGTCCAGG TAACTGAACT TGAAGGCGGT AGTCCCGAAG ACAATGCGCT CATCACCGCG
GCCATTTTAA AAGGCGAAGG CAAGGCAGCC CACCGGGATG CTGTGGCACT CAATGCAGGC
TGTGCGCTCT ATGTGGCAGG GCTTGCCGAC ACGCCCCAGG CAGGATTCAA GCTTGCCATT
GACACCCTCG CCTCCGGCAA GGCATATGAA AAACTGATTG GCCTCGCCGC CATGAGTCAG
CAGGACAAGG CGTAA
|
|---|
| Protein sequence | MSKDVRQLLD KTYGGNPLSR EEAKCLFASL VRGELDEVTI AALLMALKVR GETIDEISGA
ADAMREAANS FPRPALDGGI LDIVGTGGDG FNTINISTTA TFVAAAAGAN VAKHGNRSVS
SKSGSSDLLG QFGIELTMAP QTAANCLEAL GICFLFAPHY HGGVKHAVPV RQKLATRTLF
NVLGPLINPS HPDFMLLGVY SETLVRPIAE VLCALGVKRA MVVHGEGLDE VALHGTTQVC
ELRNGELVDY SLSPKDFGLE PVQVTELEGG SPEDNALITA AILKGEGKAA HRDAVALNAG
CALYVAGLAD TPQAGFKLAI DTLASGKAYE KLIGLAAMSQ QDKA
|
|---|
| |